Browse Element(s) Details


Os.10105.1.S1_at

Description gb:AK106519.1
DB_XREF= gi:32991728
TID=Os.10105.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10105 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-C06, full insert sequence.
FL= gb:AK101990.1 gb:AK106519.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1316011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13140NANA1+7304683..7306708transducin family protein, putative, expressed
LOC_Os01g13150Os.27302.1.S1_x_at11/111+7321947..7328957metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g13150Os.50317.1.S1_at5/111+7321947..7328957metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g13160Os.10105.3.S1_x_at11/111+7330590..7336046expressed protein
LOC_Os01g13160Os.10105.2.S1_at11/111+7330590..7336046expressed protein
LOC_Os01g13160Os.10105.1.S1_at11/111+7330590..7336046expressed protein
LOC_Os01g13170Os.3627.1.S1_a_at10/111+7337519..7342104Ubiquitin-conjugating enzyme, putative, expressed
LOC_Os01g13180NANA1+7342713..7343780expressed protein
LOC_Os01g13190Os.27540.1.S1_at11/111+7345387..7348947Histidinol dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g13190Os.27540.2.S1_x_at11/111+7345387..7348947Histidinol dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g13200Os.12707.1.S1_at10/111+7349014..7354422elongation defective 1 protein, putative, expressed
LOC_Os01g13210Os.14122.1.S1_at11/111+7360465..7362913DREPP plasma membrane polypeptide family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10105.1.S1_at--286--171Chr01:7335330..7335544 (25 bp)
ATTTTGTTTCGGATCATCTTGCAGC
LOC_Os01g13160
Os.10105.1.S1_at--709--431Chr01:7335535..7335559 (25 bp)
ATCTTGCAGCAGCTCGTGGTTCAAA
LOC_Os01g13160
Os.10105.1.S1_at--625--3011Chr01:7335602..7335626 (25 bp)
AATGCATTTGTTTGGCTTCACGCAA
LOC_Os01g13160
Os.10105.1.S1_at--426--8491Chr01:7335614..7335638 (25 bp)
TGGCTTCACGCAAACTTCACTCGTA
LOC_Os01g13160
Os.10105.1.S1_at--470--9692Chr01:7335630..7335654 (25 bp)
TCACTCGTACTCCATCGATTAGCTG
LOC_Os01g13160
Os.10105.1.S1_at--747--6451Chr01:7335655..7335679 (25 bp)
GATCAATCTCAGGACAGGTTTTGCA
LOC_Os01g13160
Os.10105.1.S1_at--141--7311Chr01:7335684..7335708 (25 bp)
GTGCTGCAACAGATGACCCAAGAAA
LOC_Os01g13160
Os.10105.1.S1_at--107--7011Chr01:7335788..7335812 (25 bp)
GTACTTATCTTCTCAGTTTCTTTTG
LOC_Os01g13160
Os.10105.1.S1_at--604--2071Chr01:7335849..7335873 (25 bp)
ACATTGTAGATTGTTCTCGGGCGGG
LOC_Os01g13160
Os.10105.1.S1_at--687--691Chr01:7335967..7335991 (25 bp)
ATGATGCCTCTTGAACCATACTGCT
LOC_Os01g13160
Os.10105.1.S1_at--917--431Chr01:7336011..7336035 (25 bp)
ATCTACGAACTATCTGCATTGTGCA
LOC_Os01g13160
Target Sequence 
ATTTTGTTTCGGATCATCTTGCAGCAGCTCGTGGTTCAAAAAAGTAACCCGAGAGCGATGGGTATGTTCAGAATGTAGCA
ACAATGCATTTGTTTGGCTTCACGCAAACTTCACTCGTACTCCATCGATTAGCTGGATCAATCTCAGGACAGGTTTTGCA
TGTTGTGCTGCAACAGATGACCCAAGAAAGAAAGAAAAGAATTCACGACGGGGGATTGTGTTGTATCATGTATCTAGACA
AATGTCGATTTTTATGTTGAAATAAGCTGTACTTATCTTCTCAGTTTCTTTTGATGCCTTGCCTTTTTTTTTTCTTTTAA
AGAGTCGGACATTGTAGATTGTTCTCGGGCGGGATTTTGTTTTTGCTGCTGTACAACANCATATTTGGTTCTTTTGACGG
GAATTGTAAAGCTTGCTACGTTAATAACAGGTGCCATACGGGAATAATGATGCCTCTTGAACCATACTGCTCACATGTTG
AGTACATTATATCTACGAACTATCTGCATTGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10105.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis