Browse Element(s) Details


Os.12707.1.S1_at

Description gb:NM_188637.1
DB_XREF= gi:34904357
TID=Os.12707.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12707 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1320010/11elongation defective 1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13150Os.27302.1.S1_x_at11/111+7321947..7328957metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g13150Os.50317.1.S1_at5/111+7321947..7328957metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g13160Os.10105.3.S1_x_at11/111+7330590..7336046expressed protein
LOC_Os01g13160Os.10105.2.S1_at11/111+7330590..7336046expressed protein
LOC_Os01g13160Os.10105.1.S1_at11/111+7330590..7336046expressed protein
LOC_Os01g13170Os.3627.1.S1_a_at10/111+7337519..7342104Ubiquitin-conjugating enzyme, putative, expressed
LOC_Os01g13180NANA1+7342713..7343780expressed protein
LOC_Os01g13190Os.27540.1.S1_at11/111+7345387..7348947Histidinol dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g13190Os.27540.2.S1_x_at11/111+7345387..7348947Histidinol dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g13200Os.12707.1.S1_at10/111+7349014..7354422elongation defective 1 protein, putative, expressed
LOC_Os01g13210Os.14122.1.S1_at11/111+7360465..7362913DREPP plasma membrane polypeptide family protein, expressed
LOC_Os01g13229OsAffx.31820.1.S1_x_at11/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13229OsAffx.31820.1.S1_at10/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13229Os.4195.1.S1_at3/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009749biological_processresponse to glucose stimulus
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
GO:0030244biological_processcellulose biosynthesis
GO:0005737cellular_componentcytoplasm
GO:0005886cellular_componentplasma membrane
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12707.1.S1_at--376--8191Chr01:7350247..7350271 (25 bp)
GGAAGCTGCTATTCTGCATTACACT
LOC_Os01g13200
Os.12707.1.S1_at--902--6491Chr01:7350189..7350213 (25 bp)
GATAGGTGTGGCTGCAAGCCCACAA
LOC_Os01g13200
Os.12707.1.S1_at--409--10251NONE
TTTGACAGATTGGTTCCGGGAACAT
NONE
Os.12707.1.S1_at--900--7411Chr01:7349666..7349690 (25 bp)
GTGTTGACACGCATATATGCCCCAA
LOC_Os01g13200
Os.12707.1.S1_at--60--8231Chr01:7349640..7349664 (25 bp)
GGCAAGTCACAATCTCGAACTTCTA
LOC_Os01g13200
Os.12707.1.S1_at--1047--5291Chr01:7349590..7349614 (25 bp)
GAAGGCAGCAACTCATCTCTTGAAT
LOC_Os01g13200
Os.12707.1.S1_at--827--2991Chr01:7349568..7349592 (25 bp)
AATGATTCATCTTTGCAGGCTATCA
LOC_Os01g13200
Os.12707.1.S1_at--563--3491Chr01:7349553..7349577 (25 bp)
CAGGCTATCATTCGTGGTCTCAAGG
LOC_Os01g13200
Os.12707.1.S1_at--215--7791Chr01:7349538..7349562 (25 bp)
GGTCTCAAGGAATCCGGCGTATTCA
LOC_Os01g13200
Os.12707.1.S1_at--937--1711Chr01:7349514..7349538 (25 bp)
ACCACCGCGGTAACTTCAGCAAAAG
LOC_Os01g13200
Os.12707.1.S1_at--572--3211Chr01:7349421..7349445 (25 bp)
CAAGGTGATCATTTGCAAGCCACAG
LOC_Os01g13200
Target Sequence 
GGAAGCTGCTATTCTGCATTACACTTACACAAAGTTCTCAGACTTAACTTCAAGGAGGGATAGGTGTGGCTGCAAGCCCA
CAAAGGAAGATGTGAAGCGATGTTTTATCTTGGAATTTGACAGATTGGTTCCGGGAACATGTTTTATGGAACGACAAAGA
TACCAATTTGAAGCTTTTGAGGAAGGGTGTGTTGACACGCATATATGCCCCAATGGCAAGTCACAATCTCGAACTTCTAT
TAGGAGTACCTTTATCTCAACAATGAAGGCAGCAACTCATCTCTTGAATGATTCATCTTTGCAGGCTATCATTCGTGGTC
TCAAGGAATCCGGCGTATTCACCACCGCGGTAACTTCAGCAAAAGCGCATGCAAAATTTAAGTCATCAAATACGGATCTC
AAAAACAAGGAGTCTATTCATCCAAATATAACCCAAGGTGATCATTTGCAAGCCACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis