Browse Element(s) Details


OsAffx.31820.1.S1_at

Description tigr:9629.m01298
TID=OsAffx.31820.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1322910/11Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g203244/11Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g132602/11Cyclin, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13170Os.3627.1.S1_a_at10/111+7337519..7342104Ubiquitin-conjugating enzyme, putative, expressed
LOC_Os01g13180NANA1+7342713..7343780expressed protein
LOC_Os01g13190Os.27540.1.S1_at11/111+7345387..7348947Histidinol dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g13190Os.27540.2.S1_x_at11/111+7345387..7348947Histidinol dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g13200Os.12707.1.S1_at10/111+7349014..7354422elongation defective 1 protein, putative, expressed
LOC_Os01g13210Os.14122.1.S1_at11/111+7360465..7362913DREPP plasma membrane polypeptide family protein, expressed
LOC_Os01g13229OsAffx.31820.1.S1_x_at11/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13229OsAffx.31820.1.S1_at10/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13229Os.4195.1.S1_at3/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13250Os.11084.2.S1_at11/111+7382697..7384966expressed protein
LOC_Os01g13250Os.11084.2.S1_x_at7/111+7382697..7384966expressed protein
LOC_Os01g13260Os.4195.1.S1_at11/111+7386175..7390510Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13260OsAffx.31820.1.S1_x_at7/111+7386175..7390510Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13260OsAffx.31820.1.S1_at2/111+7386175..7390510Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13270Os.34829.1.S1_at11/111+7397311..7401114Protein kinase PVPK-1, putative, expressed
LOC_Os01g13270OsAffx.2666.1.S1_x_at1/111+7397311..7401114Protein kinase PVPK-1, putative, expressed
LOC_Os01g13280Os.3634.1.S1_a_at11/111+7401700..7406442Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g13280Os.48021.1.S1_x_at3/111+7401700..7406442Ubiquitin-conjugating enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31820.1.S1_at--1152--4131Chr12:11866361..11866784 (25 bp)
CGCGAGGCCGAGTGGGTTCCATTTA
LOC_Os12g20324
OsAffx.31820.1.S1_at--932--4612Chr12:11866360..11866783 (25 bp)
GCGAGGCCGAGTGGGTTCCATTTAA
LOC_Os12g20324
OsAffx.31820.1.S1_at--122--6212Chr12:11866358..11866781 (25 bp)
GAGGCCGAGTGGGTTCCATTTAATG
LOC_Os12g20324
OsAffx.31820.1.S1_at--941--4491Chr01:7375793..7375813 (21 bp)
GCCGAGTGGGTTCCATTTAATGACC
LOC_Os01g13229
OsAffx.31820.1.S1_at--479--6111Chr01:7375790..7375813 (24 bp)
GAGTGGGTTCCATTTAATGACCTTC
LOC_Os01g13229
OsAffx.31820.1.S1_at--311--7491Chr01:7375788..7375812 (25 bp)
GTGGGTTCCATTTAATGACCTTCAT
LOC_Os01g13229
OsAffx.31820.1.S1_at--559--7671Chr01:7375786..7375810 (25 bp)
GGGTTCCATTTAATGACCTTCATAT
LOC_Os01g13229
OsAffx.31820.1.S1_at--765--6691Chr01:7375784..7375808 (25 bp)
GTTCCATTTAATGACCTTCATATTG
LOC_Os01g13229
OsAffx.31820.1.S1_at--510--8911Chr01:7375773..7375797 (25 bp)
TGACCTTCATATTGAAATTCCTTAT
LOC_Os01g13229
OsAffx.31820.1.S1_at--717--8872Chr01:7388235..7388259 (25 bp)
TGAAATTCCTTATAGAACCAGTAGA
LOC_Os01g13260
OsAffx.31820.1.S1_at--1137--10013Chr12:11866098..11866335 (25 bp)
TAGAACCAGTAGAAGCACATCATAT
LOC_Os12g20324
Target Sequence 
CGCGAGGCCGAGTGGGTTCCATTTAATGACCTTCATATTGAAATTCCTTATAGAACCAGTAGAAGCACATCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31820.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis