Browse Element(s) Details


OsAffx.2666.1.S1_x_at

Description tigr:9630.m01741
TID=OsAffx.2666.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=viroid symptom modulation protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1843011/11Protein kinase PVPK-1, putative
LOC_Os10g412901/11Protein kinase PVPK-1, putative, expressed
LOC_Os02g437401/11Protein kinase G11A, putative, expressed
LOC_Os01g132701/11Protein kinase PVPK-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18380Os.46751.1.S1_at8/112+10700791..1070151460S ribosomal protein L27, putative, expressed
LOC_Os02g18390OsAffx.12099.1.S1_s_at11/112+10704316..10705002expressed protein
LOC_Os02g18400OsAffx.2665.1.S1_at11/112+10705442..10705903hypothetical protein
LOC_Os02g18410Os.6656.1.S1_at11/112+10715007..10716765plasma membrane intrinsic polypeptide, putative, expressed
LOC_Os02g18420OsAffx.24304.1.S1_at11/112+10721538..10721804hypothetical protein
LOC_Os02g18430OsAffx.2666.1.S1_x_at11/112+10726134..10727708Protein kinase PVPK-1, putative
LOC_Os02g18430Os.46554.2.S1_x_at1/112+10726134..10727708Protein kinase PVPK-1, putative
LOC_Os02g18440OsAffx.22940.2.S1_s_at8/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.1.S1_s_at7/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.5.S1_x_at6/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.3.S1_x_at6/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.2.S1_at3/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.5.S1_at2/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440Os.35344.3.S1_x_at2/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440Os.35344.18.S1_x_at2/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.31552.2.S1_at1/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18450Os.17566.1.S1_at10/112+10739449..10747065GTP-binding protein TypA/BipA homolog, putative, expressed
LOC_Os02g18460OsAffx.24305.1.S1_at11/112+10747493..10749004expressed protein
LOC_Os02g18470OsAffx.24306.1.S1_at11/112+10752547..10754223hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2666.1.S1_x_at--443--4091Chr02:10726663..10726687 (25 bp)
CGACGTCGCTGGAGTTCACCGCGGA
LOC_Os02g18430
OsAffx.2666.1.S1_x_at--182--1774Chr10:21862357..21862401 (25 bp)
ACCTGGCGCCGGAGATCATCCGCGG
LOC_Os10g41290
OsAffx.2666.1.S1_x_at--200--4671Chr02:10726531..10726555 (25 bp)
GCGTGTTCCTGTACGAGCTGCTGCA
LOC_Os02g18430
OsAffx.2666.1.S1_x_at--861--8751Chr02:10726522..10726546 (25 bp)
TGTACGAGCTGCTGCACGGGACGAC
LOC_Os02g18430
OsAffx.2666.1.S1_x_at--762--9111Chr02:10726513..10726537 (25 bp)
TGCTGCACGGGACGACGCCGTTCAA
LOC_Os02g18430
OsAffx.2666.1.S1_x_at--1127--4071Chr02:10726501..10726525 (25 bp)
CGACGCCGTTCAAGGGCTCCGGCAA
LOC_Os02g18430
OsAffx.2666.1.S1_x_at--666--4731Chr02:10726467..10726491 (25 bp)
GCTGTTCAACGTCGTCGGCCAGCCG
LOC_Os02g18430
OsAffx.2666.1.S1_x_at--449--7071Chr02:10726379..10726403 (25 bp)
GTCAAGGAGCCCCAGTCCAGGCTCG
LOC_Os02g18430
OsAffx.2666.1.S1_x_at--784--4571Chr02:10726295..10726319 (25 bp)
GCGCTGGTCAGGAGCGCCATGCCAC
LOC_Os02g18430
OsAffx.2666.1.S1_x_at--1033--2592Chr05:26217623..26217723 (24 bp)
AACGCCGAAGAAGAGCGCCGCCGGT
NONE
OsAffx.2666.1.S1_x_at--443--5291Chr02:10726164..10726188 (25 bp)
GAAGGCCAGCTCGCCACGGGATGAT
LOC_Os02g18430
Target Sequence 
CGACGTCGCTGGAGTTCACCGCGGAGCCGACGGGGGCGAGGTCGATGTCGTTCGTGGGCACGCACGAGTACCTGGCGCCG
GAGATCATCCGCGGCGAGGGGCACGGCAGCGCCGTCGACTGGTGGACGTTCGGCGTGTTCCTGTACGAGCTGCTGCACGG
GACGACGCCGTTCAAGGGCTCCGGCAACCGCGCCACGCTGTTCAACGTCGTCGGCCAGCCGCTCCGGTTCCCGGACGCGC
CGGCGGCCAGCGCCGCCGCCAGGGACCTCATCCGCGGCCTGCTCGTCAAGGAGCCCCAGTCCAGGCTCGCCTACCGCCGC
GGCGCCACCGAGGTCAAGCAGCACCCGTTCTTCGACGGCGTCAACTGGGCGCTGGTCAGGAGCGCCATGCCACCCTACAT
CCCGGAGGCGGACGTCGCCGCCGCCGCCGTGGACTGCCGCTCGCCGCTCGCGCGCGCGACGCAGGGCGGCGGAACGCCGA
AGAAGAGCGCCGCCGGTGGGAAGGCCAGCTCGCCACGGGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2666.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis