Browse Element(s) Details


Os.6656.1.S1_at

Description gb:AK058613.1
DB_XREF= gi:32968631
TID=Os.6656.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6656 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-A12, full insert sequence.
FL= gb:AK058613.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1841011/11plasma membrane intrinsic polypeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18370Os.51849.1.S1_at11/112+10692548..10696750transposon protein, putative, unclassified, expressed
LOC_Os02g18380Os.46751.1.S1_at8/112+10700791..1070151460S ribosomal protein L27, putative, expressed
LOC_Os02g18390OsAffx.12099.1.S1_s_at11/112+10704316..10705002expressed protein
LOC_Os02g18400OsAffx.2665.1.S1_at11/112+10705442..10705903hypothetical protein
LOC_Os02g18410Os.6656.1.S1_at11/112+10715007..10716765plasma membrane intrinsic polypeptide, putative, expressed
LOC_Os02g18420OsAffx.24304.1.S1_at11/112+10721538..10721804hypothetical protein
LOC_Os02g18430OsAffx.2666.1.S1_x_at11/112+10726134..10727708Protein kinase PVPK-1, putative
LOC_Os02g18430Os.46554.2.S1_x_at1/112+10726134..10727708Protein kinase PVPK-1, putative
LOC_Os02g18440OsAffx.22940.2.S1_s_at8/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.1.S1_s_at7/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.5.S1_x_at6/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.3.S1_x_at6/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.2.S1_at3/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.5.S1_at2/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440Os.35344.3.S1_x_at2/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440Os.35344.18.S1_x_at2/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.31552.2.S1_at1/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18450Os.17566.1.S1_at10/112+10739449..10747065GTP-binding protein TypA/BipA homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6656.1.S1_at--391--5071Chr02:10715330..10715354 (25 bp)
GCACCAAAGGCCTAACTAGCTATAG
LOC_Os02g18410
Os.6656.1.S1_at--337--9991Chr02:10715304..10715328 (25 bp)
TAGCTAGGGTTCATCGCCGCCATTA
LOC_Os02g18410
Os.6656.1.S1_at--804--151Chr02:10715283..10715307 (25 bp)
ATTATTGATGGACGCCTCAAGCCCT
LOC_Os02g18410
Os.6656.1.S1_at--988--7971Chr02:10715248..10715272 (25 bp)
GGATGATCGATGTCGTCGTTGTGCC
LOC_Os02g18410
Os.6656.1.S1_at--331--7211Chr02:10715234..10715258 (25 bp)
GTCGTTGTGCCATGTCACCAGTCAC
LOC_Os02g18410
Os.6656.1.S1_at--986--1731Chr02:10715205..10715229 (25 bp)
ACCATTCTTTGCTCTTACACATATG
LOC_Os02g18410
Os.6656.1.S1_at--126--6751Chr02:10715151..10715175 (25 bp)
GTTCATTATTTTTCTCTACCATTTC
LOC_Os02g18410
Os.6656.1.S1_at--287--10551Chr02:10715129..10715153 (25 bp)
TTCTTCCCCTCTTTATGGTTAGACG
LOC_Os02g18410
Os.6656.1.S1_at--275--9791Chr02:10715102..10715126 (25 bp)
TAAGCCTATAATTTTTGTCTGTACT
LOC_Os02g18410
Os.6656.1.S1_at--694--8131Chr02:10715054..10715078 (25 bp)
GGACATGTATGTATGGCATCTGTAT
LOC_Os02g18410
Os.6656.1.S1_at--639--151Chr02:10715029..10715053 (25 bp)
ATTATCGCCAGTTTTGTTCATCTTG
LOC_Os02g18410
Target Sequence 
GCACCAAAGGCCTAACTAGCTATAGCTAGCTAGGGTTCATCGCCGCCATTATTGATGGACGCCTCAAGCCCTAGCTAGAG
AGGGATGATCGATGTCGTCGTTGTGCCATGTCACCAGTCACCACCACCATTCTTTGCTCTTACACATATGCATGATGATG
CAGATATTCCATTATTGTTGTTCATTATTTTTCTCTACCATTTCTTCCCCTCTTTATGGTTAGACGTGTAAGCCTATAAT
TTTTGTCTGTACTTAAATTAATTATATGCAGTGTGAGGACATGTATGTATGGCATCTGTATATTATCGCCAGTTTTGTTC
ATCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6656.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis