Browse Element(s) Details


OsAffx.12099.1.S1_s_at

Description tigr:9630.m01736
TID=OsAffx.12099.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1839011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18360Os.35344.3.S1_x_at11/112+10681484..10688092transposon protein, putative, Mutator sub-class
LOC_Os02g18360Os.35344.18.S1_x_at10/112+10681484..10688092transposon protein, putative, Mutator sub-class
LOC_Os02g18360OsAffx.22940.2.S1_s_at8/112+10681484..10688092transposon protein, putative, Mutator sub-class
LOC_Os02g18360OsAffx.22940.3.S1_x_at6/112+10681484..10688092transposon protein, putative, Mutator sub-class
LOC_Os02g18360OsAffx.22940.5.S1_x_at4/112+10681484..10688092transposon protein, putative, Mutator sub-class
LOC_Os02g18360OsAffx.22940.1.S1_s_at2/112+10681484..10688092transposon protein, putative, Mutator sub-class
LOC_Os02g18370Os.51849.1.S1_at11/112+10692548..10696750transposon protein, putative, unclassified, expressed
LOC_Os02g18380Os.46751.1.S1_at8/112+10700791..1070151460S ribosomal protein L27, putative, expressed
LOC_Os02g18390OsAffx.12099.1.S1_s_at11/112+10704316..10705002expressed protein
LOC_Os02g18400OsAffx.2665.1.S1_at11/112+10705442..10705903hypothetical protein
LOC_Os02g18410Os.6656.1.S1_at11/112+10715007..10716765plasma membrane intrinsic polypeptide, putative, expressed
LOC_Os02g18420OsAffx.24304.1.S1_at11/112+10721538..10721804hypothetical protein
LOC_Os02g18430OsAffx.2666.1.S1_x_at11/112+10726134..10727708Protein kinase PVPK-1, putative
LOC_Os02g18430Os.46554.2.S1_x_at1/112+10726134..10727708Protein kinase PVPK-1, putative
LOC_Os02g18440OsAffx.22940.2.S1_s_at8/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.1.S1_s_at7/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.5.S1_x_at6/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.3.S1_x_at6/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.2.S1_at3/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.5.S1_at2/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440Os.35344.3.S1_x_at2/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440Os.35344.18.S1_x_at2/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.31552.2.S1_at1/112+10728808..10735256SWIM zinc finger family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12099.1.S1_s_at--843--7451Chr02:10704589..10704613 (25 bp)
GTGTCCGGCTTCGAAGATGACGACG
LOC_Os02g18390
OsAffx.12099.1.S1_s_at--527--7491Chr02:10704540..10704564 (25 bp)
GTGGGAGGCACTGAATCGCTCACCT
LOC_Os02g18390
OsAffx.12099.1.S1_s_at--1063--6191Chr02:10704536..10704560 (25 bp)
GAGGCACTGAATCGCTCACCTCGGC
LOC_Os02g18390
OsAffx.12099.1.S1_s_at--216--3791Chr02:10704517..10704541 (25 bp)
CTCGGCTCGGCTCATGTATTGTTTG
LOC_Os02g18390
OsAffx.12099.1.S1_s_at--539--4811Chr02:10704513..10704537 (25 bp)
GCTCGGCTCATGTATTGTTTGTTTG
LOC_Os02g18390
OsAffx.12099.1.S1_s_at--296--10811Chr02:10704499..10704523 (25 bp)
TTGTTTGTTTGGTTTCTCACCGATT
LOC_Os02g18390
OsAffx.12099.1.S1_s_at--889--6831Chr02:10704488..10704512 (25 bp)
GTTTCTCACCGATTTCTTTCTTTAG
LOC_Os02g18390
OsAffx.12099.1.S1_s_at--729--3351Chr02:10704482..10704506 (25 bp)
CACCGATTTCTTTCTTTAGAATCGA
LOC_Os02g18390
OsAffx.12099.1.S1_s_at--786--9171Chr02:10704405..10704429 (25 bp)
TAACATGGGAGGTGATTGGGTTTAT
LOC_Os02g18390
OsAffx.12099.1.S1_s_at--639--8631Chr02:10704389..10704413 (25 bp)
TGGGTTTATCATGTTTTGAAGCAGA
LOC_Os02g18390
OsAffx.12099.1.S1_s_at--346--10212Chr04:4013660..4013779 (24 bp)
TTTGTTCCTTTGTCTGAAGGAGACC
NONE
Target Sequence 
GTGTCCGGCTTCGAAGATGACGACGACGACTGCAAGCCCGCGAAGAAGCGTGGGAGGCACTGAATCGCTCACCTCGGCTC
GGCTCATGTATTGTTTGTTTGGTTTCTCACCGATTTCTTTCTTTAGAATCGAAGAATGAATTCGAGATAGAGCGAAAGGA
AAATTAAACAATAATTAGTAGTAATAACATGGGAGGTGATTGGGTTTATCATGTTTTGAAGCAGAGAATTGCTGTAATTT
TTTTTTGTTCCTTTGTCTGAAGGAGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12099.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis