Browse Element(s) Details


Os.46751.1.S1_at

Description gb:AK121593.1
DB_XREF= gi:37991216
TID=Os.46751.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46751 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033038C19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033038C19, full insert sequence.
FL= gb:AK121593.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g183808/1160S ribosomal protein L27, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18350OsAffx.13936.1.A1_at11/112+10677080..10678983hypothetical protein
LOC_Os02g18360Os.35344.3.S1_x_at11/112+10681484..10688092transposon protein, putative, Mutator sub-class
LOC_Os02g18360Os.35344.18.S1_x_at10/112+10681484..10688092transposon protein, putative, Mutator sub-class
LOC_Os02g18360OsAffx.22940.2.S1_s_at8/112+10681484..10688092transposon protein, putative, Mutator sub-class
LOC_Os02g18360OsAffx.22940.3.S1_x_at6/112+10681484..10688092transposon protein, putative, Mutator sub-class
LOC_Os02g18360OsAffx.22940.5.S1_x_at4/112+10681484..10688092transposon protein, putative, Mutator sub-class
LOC_Os02g18360OsAffx.22940.1.S1_s_at2/112+10681484..10688092transposon protein, putative, Mutator sub-class
LOC_Os02g18370Os.51849.1.S1_at11/112+10692548..10696750transposon protein, putative, unclassified, expressed
LOC_Os02g18380Os.46751.1.S1_at8/112+10700791..1070151460S ribosomal protein L27, putative, expressed
LOC_Os02g18390OsAffx.12099.1.S1_s_at11/112+10704316..10705002expressed protein
LOC_Os02g18400OsAffx.2665.1.S1_at11/112+10705442..10705903hypothetical protein
LOC_Os02g18410Os.6656.1.S1_at11/112+10715007..10716765plasma membrane intrinsic polypeptide, putative, expressed
LOC_Os02g18420OsAffx.24304.1.S1_at11/112+10721538..10721804hypothetical protein
LOC_Os02g18430OsAffx.2666.1.S1_x_at11/112+10726134..10727708Protein kinase PVPK-1, putative
LOC_Os02g18430Os.46554.2.S1_x_at1/112+10726134..10727708Protein kinase PVPK-1, putative

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005622cellular_componentintracellular
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46751.1.S1_at--664--10091Chr02:10700970..10700994 (25 bp)
TAGGCGCGCCTTCTTGTTCTTGCTA
LOC_Os02g18380
Os.46751.1.S1_at--464--9591Chr02:10700959..10700983 (25 bp)
TCTTGTTCTTGCTATCATCCGTTAA
LOC_Os02g18380
Os.46751.1.S1_at--701--6731Chr02:10700955..10700979 (25 bp)
GTTCTTGCTATCATCCGTTAATCTA
LOC_Os02g18380
Os.46751.1.S1_at--673--4871NONE
GCTATCATCCGTTAATCTATCTCTG
NONE
Os.46751.1.S1_at--857--411NONE
ATCATCCGTTAATCTATCTCTGCTT
NONE
Os.46751.1.S1_at--86--471NONE
ATCTCTGCTTTTTTTGGTATCTGTG
NONE
Os.46751.1.S1_at--565--10851Chr02:10700918..10700942 (25 bp)
TTGGTATCTGTGTCCATGAAGACTT
LOC_Os02g18380
Os.46751.1.S1_at--434--3891Chr02:10700911..10700935 (25 bp)
CTGTGTCCATGAAGACTTGGTTGTT
LOC_Os02g18380
Os.46751.1.S1_at--961--5671Chr02:10700898..10700922 (25 bp)
GACTTGGTTGTTAGTATTGAGTTTA
LOC_Os02g18380
Os.46751.1.S1_at--404--4831Chr02:10700855..10700879 (25 bp)
GCTCATGTGTTATGAAGTCATGCCA
LOC_Os02g18380
Os.46751.1.S1_at--603--1971Chr02:10700794..10700818 (25 bp)
ACTGCTTCAGATGCGATTTGTTTTC
LOC_Os02g18380
Target Sequence 
TAGGCGCGCCTTCTTGTTCTTGCTATCATCCGTTAATCTATCTCTGCTTTTTTTGGTATCTGTGTCCATGAAGACTTGGT
TGTTAGTATTGAGTTTAAAATTAAGACATGATGATGCTCATGTGTTATGAAGTCATGCCAAGGNTAGATCTGGTTGNAAG
TTTTGTTTNGGGAATTACACTGCTTCAGATGCGATTTGTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46751.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis