Browse Element(s) Details


OsAffx.13936.1.A1_at

Description tigr:9630.m01732
TID=OsAffx.13936.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1835011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18330OsAffx.10633.1.S1_at3/112+10647760..10653099retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18340Os.8747.3.S1_x_at1/112+10657825..10663069retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g18350OsAffx.13936.1.A1_at11/112+10677080..10678983hypothetical protein
LOC_Os02g18360Os.35344.3.S1_x_at11/112+10681484..10688092transposon protein, putative, Mutator sub-class
LOC_Os02g18360Os.35344.18.S1_x_at10/112+10681484..10688092transposon protein, putative, Mutator sub-class
LOC_Os02g18360OsAffx.22940.2.S1_s_at8/112+10681484..10688092transposon protein, putative, Mutator sub-class
LOC_Os02g18360OsAffx.22940.3.S1_x_at6/112+10681484..10688092transposon protein, putative, Mutator sub-class
LOC_Os02g18360OsAffx.22940.5.S1_x_at4/112+10681484..10688092transposon protein, putative, Mutator sub-class
LOC_Os02g18360OsAffx.22940.1.S1_s_at2/112+10681484..10688092transposon protein, putative, Mutator sub-class
LOC_Os02g18370Os.51849.1.S1_at11/112+10692548..10696750transposon protein, putative, unclassified, expressed
LOC_Os02g18380Os.46751.1.S1_at8/112+10700791..1070151460S ribosomal protein L27, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13936.1.A1_at--52--9173Chr04:13149427..13149450 (24 bp)
TGCCGCCGGCGTAGCTAGACACGTA
NONE
OsAffx.13936.1.A1_at--810--4473Chr04:13149430..13149454 (25 bp)
GCCGGCGTAGCTAGACACGTACGTG
NONE
OsAffx.13936.1.A1_at--1051--9291Chr02:10677887..10677911 (25 bp)
TCCGCCGTCTGCCTTGTGTTCAAGC
LOC_Os02g18350
OsAffx.13936.1.A1_at--69--4331Chr02:10677876..10677900 (25 bp)
CCTTGTGTTCAAGCGCAGGCAATCG
LOC_Os02g18350
OsAffx.13936.1.A1_at--165--7431Chr02:10677872..10677896 (25 bp)
GTGTTCAAGCGCAGGCAATCGGACT
LOC_Os02g18350
OsAffx.13936.1.A1_at--1018--3231Chr02:10677867..10677891 (25 bp)
CAAGCGCAGGCAATCGGACTACACG
LOC_Os02g18350
OsAffx.13936.1.A1_at--1007--1451Chr02:10677196..10677216 (21 bp)
AGCCGGGTTTGTCTCCTCCTATGTA
LOC_Os02g18350
OsAffx.13936.1.A1_at--1026--10251Chr02:10677189..10677213 (25 bp)
TTTGTCTCCTCCTATGTACTGCACT
LOC_Os02g18350
OsAffx.13936.1.A1_at--44--10131Chr02:10677177..10677201 (25 bp)
TATGTACTGCACTGTCACTCGTAGT
LOC_Os02g18350
OsAffx.13936.1.A1_at--1007--6991Chr02:10677174..10677198 (25 bp)
GTACTGCACTGTCACTCGTAGTCTA
LOC_Os02g18350
OsAffx.13936.1.A1_at--613--9034Chr01:17836465..17836484 (20 bp)
TGCACTGTCACTCGTAGTCTACTCC
NONE
Target Sequence 
TGCCGCCGGCGTAGCTAGACACGTACGTGGTGCAGATGCCCAAGGACAAGGTGTTCCGCATCCCGCCGCCGGAGAACGCG
CGCCTCTTCCAGCACTACACGTCTACACCCGCCACGCCCGCTGCTCCTGCGTCTGCGTCTGCTCCTGGTTCCTCCTCGCG
CTCGCAGCCTTCGCCTCCGCCGTCTGCCTTGTGTTCAAGCGCAGGCAATCGGACTACACGCTCCAGGGCGCGGACCTTCT
CGTCGGCCTCTCGGCGTTGCGCCGCCGCTACGCCTCCAGGTCGGCCAGCCGGGTTTGTCTCCTCCTATGTACTGCACTGT
CACTCGTAGTCTACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13936.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis