Browse Element(s) Details


OsAffx.10633.1.S1_at

Description gb:NM_183972.1
DB_XREF= gi:34895071
GEN=B1045F02.32
TID=OsAffx.10633.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1045F02.32 (B1045F02.32), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2421011/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g219709/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g149708/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g105008/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g292067/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g023307/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g230907/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g208307/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g251007/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g251006/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g257605/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g188105/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g169404/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g234604/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g265404/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g026303/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g171103/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g183303/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g103103/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g429341/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24160NANA1+13603818..13604184hypothetical protein
LOC_Os01g24170NANA1+13606853..13607248hypothetical protein
LOC_Os01g24180Os.24831.3.S1_s_at10/111+13608887..13612909retrotransposon protein, putative, unclassified
LOC_Os01g24180Os.24831.1.S1_x_at4/111+13608887..13612909retrotransposon protein, putative, unclassified
LOC_Os01g24180Os.24831.3.S1_x_at4/111+13608887..13612909retrotransposon protein, putative, unclassified
LOC_Os01g24180Os.24831.4.S1_x_at1/111+13608887..13612909retrotransposon protein, putative, unclassified
LOC_Os01g24190NANA1+13613332..13615403transposon protein, putative, unclassified
LOC_Os01g24200NANA1+13617731..13619699hypothetical protein
LOC_Os01g24210OsAffx.10633.1.S1_at11/111+13626466..13629121retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g24220NANA1+13630597..13632960retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24230NANA1+13638287..13639670hypothetical protein
LOC_Os01g24240OsAffx.11185.1.S1_at11/111+13644483..13647255hypothetical protein
LOC_Os01g24249NANA1+13648714..13648882NA
LOC_Os01g24260OsAffx.30226.2.S1_s_at7/111+13649575..13653414retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24260OsAffx.442.1.S1_x_at6/111+13649575..13653414retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24260OsAffx.30226.2.S1_x_at2/111+13649575..13653414retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24260OsAffx.442.1.S1_at1/111+13649575..13653414retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10633.1.S1_at--1152--81518Chr12:15508878..15508901 (24 bp)
GGAAACATTCTCTGCTTATACATAC
LOC_Os12g26540
OsAffx.10633.1.S1_at--781--2013Chr01:13628635..13628659 (25 bp)
ACTACCTGAGGTGCACTTCAATGTA
LOC_Os01g24210
OsAffx.10633.1.S1_at--729--9318Chr12:14413023..14413047 (25 bp)
AGGCACCACAACCTCGTAGCAATGG
LOC_Os12g25100
OsAffx.10633.1.S1_at--538--75116Chr12:15509176..15509200 (25 bp)
GTGGATCTGACACTCATGTCGCTAA
LOC_Os12g26540
OsAffx.10633.1.S1_at--428--98312Chr12:15509198..15509222 (25 bp)
TAAAGACTGCCGCATCCCGAAACAT
LOC_Os12g26540
OsAffx.10633.1.S1_at--918--5531Chr01:13628878..13628902 (25 bp)
GAAACATCTTATCCTCTTGTACCAA
LOC_Os01g24210
OsAffx.10633.1.S1_at--549--9852Chr01:13628962..13628986 (25 bp)
TACACATGAAGAGCACCCTGAGGTT
LOC_Os01g24210
OsAffx.10633.1.S1_at--473--88918Chr12:15509318..15509342 (25 bp)
TGAGGTTGCAAGTTCTCACCAGGCT
LOC_Os12g26540
OsAffx.10633.1.S1_at--709--13513Chr12:14413249..14413273 (25 bp)
AGAGCAACCTCAATGTTCTCCCAGA
LOC_Os12g25100
OsAffx.10633.1.S1_at--1097--87917Chr12:14413262..14413286 (25 bp)
TGTTCTCCCAGAAGATGTCGCTCCA
LOC_Os12g25100
OsAffx.10633.1.S1_at--440--4795Chr12:5442875..5443013 (25 bp)
GCTCCACTCTCTACGATGGATGATA
LOC_Os12g10310
Target Sequence 
GGAAACATTCTCTGCTTATACATACATTGACTCAGGCAGAAAGACACCATGAGCTTTCTTTAAAGAATGCCCAACAGCGC
CCACCGGGCTCTGCTCCACTACCTGAGGTGCACTTCAATGTACAGAATAATGCTGAGAATAAGAAAGGATTCAAGGGAAA
TTCTTCGAATAATCATAAGAATCTGACTGGAAAGCGCAAACGCAACAACAACAGGCGCAAATTCAAGGGTCGAAAGAAAG
GAAAAGGGAAGGGTAAGGCACCACAACCTCGTAGCAATGGCAACAAGCATTGCAACAGGTGTGGATCTGACACTCATGTC
GCTAAAGACTGCCGCATCCCGAAACATCTTATCCTCTTGTACCAAAAATCCCTCAAGGACAAAAAATCTTCTGAGAACCC
AAGATTTGAAGCACACTTCAATATTACACATGAAGAGCACCCTGAGGTTGCAAGTTCTCACCAGGCTCCTGCTGAACCAG
AGAGCAACCTCAATGTTCTCCCAGAAGATGTCGCTCCACTCTCTACGATGGATGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10633.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis