Browse Element(s) Details


OsAffx.11185.1.S1_at

Description tigr:9629.m02341
TID=OsAffx.11185.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2424011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24200NANA1+13617731..13619699hypothetical protein
LOC_Os01g24210OsAffx.10633.1.S1_at11/111+13626466..13629121retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g24220NANA1+13630597..13632960retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24230NANA1+13638287..13639670hypothetical protein
LOC_Os01g24240OsAffx.11185.1.S1_at11/111+13644483..13647255hypothetical protein
LOC_Os01g24249NANA1+13648714..13648882NA
LOC_Os01g24260OsAffx.30226.2.S1_s_at7/111+13649575..13653414retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24260OsAffx.442.1.S1_x_at6/111+13649575..13653414retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24260OsAffx.30226.2.S1_x_at2/111+13649575..13653414retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24260OsAffx.442.1.S1_at1/111+13649575..13653414retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24270OsAffx.10637.2.S1_at11/111+13654617..13655093hypothetical protein
LOC_Os01g24280NANA1+13660860..13661542retrotransposon protein, putative, unclassified
LOC_Os01g24294OsAffx.25936.1.S1_s_at9/111+13666863..13676778retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g24294OsAffx.25936.7.S1_s_at8/111+13666863..13676778retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g24294OsAffx.25936.1.S1_at7/111+13666863..13676778retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g24294OsAffx.25936.2.S1_x_at4/111+13666863..13676778retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g24294OsAffx.25936.5.S1_x_at3/111+13666863..13676778retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g24294OsAffx.28520.1.S1_at1/111+13666863..13676778retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g24294Os.56077.1.S1_x_at1/111+13666863..13676778retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11185.1.S1_at--581--5331Chr01:13646655..13646679 (25 bp)
GAAGTGCCATCTGCGTGACGATATT
LOC_Os01g24240
OsAffx.11185.1.S1_at--17--5771Chr01:13646671..13646695 (25 bp)
GACGATATTCGTTGGGCTTGCAATG
LOC_Os01g24240
OsAffx.11185.1.S1_at--379--8231Chr01:13646756..13646780 (25 bp)
GGCACATGCATGATCCTTCAGAACG
LOC_Os01g24240
OsAffx.11185.1.S1_at--1028--5451Chr01:13646776..13646800 (25 bp)
GAACGTCATAGCTCTCCTGATGAGA
LOC_Os01g24240
OsAffx.11185.1.S1_at--56--8851Chr01:13646810..13646834 (25 bp)
TGATCACTGCCATTCACTTGTCAAA
LOC_Os01g24240
OsAffx.11185.1.S1_at--344--231Chr01:13646844..13646868 (25 bp)
ATATTTGCTAGCATCGTGCCCAGAG
LOC_Os01g24240
OsAffx.11185.1.S1_at--207--2811Chr01:13646920..13646944 (25 bp)
AAGATCACCGACTCTGTTTTGGGCA
LOC_Os01g24240
OsAffx.11185.1.S1_at--230--6851Chr01:13646960..13646984 (25 bp)
GTTTCGAATTTGACCGCATGATGCA
LOC_Os01g24240
OsAffx.11185.1.S1_at--15--1051Chr01:13647027..13647051 (25 bp)
AGGTGTACAACTCGGCAAGCAGCTG
LOC_Os01g24240
OsAffx.11185.1.S1_at--750--8851Chr01:13647113..13647137 (25 bp)
TGATGCTATATGTTGCTCCTTCCGA
LOC_Os01g24240
OsAffx.11185.1.S1_at--426--8831Chr01:13647182..13647206 (25 bp)
TGATAACAATCCTCTGGGCACTTCT
LOC_Os01g24240
Target Sequence 
GAAGTGCCATCTGCGTGACGATATTCGTTGGGCTTGCAATGGTGAAGGGACATCTGACATTATTCTTGTTTGGCACATTG
CAACTTGCATCTTTGAGATCAGGCACATGCATGATCCTTCAGAACGTCATAGCTCTCCTGATGAGAATGATGATATGATC
ACTGCCATTCACTTGTCAAAGTACTGTGCATATTTGCTAGCATCGTGCCCAGAGCTACTGCCAGATGACACTCCATGGTC
AAAAGAATTGTATAAATCTGCCAAGAAGATCACCGACTCTGTTTTGGGCAGCACTGATATGAGGTGTTTCGAATTTGACC
GCATGATGCAATTACTGAGTGAAAAATCAAAGAGCAATGAGGTGGTGTGCAAAGGTGTACAACTCGGCAAGCAGCTGGTT
GATGGAATTCAGAATGAAAACAAGGGGTGGAATATGCTTGCTGAGTTTTGGTCAGAGATGATGCTATATGTTGCTCCTTC
CGACAATACAAAGGCACATGCAAAGGCCATTGCCAGGGGAGGCGAGCTGATAACAATCCTCTGGGCACTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11185.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis