Browse Element(s) Details


Os.51849.1.S1_at

Description gb:AK064078.1
DB_XREF= gi:32974096
TID=Os.51849.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51849 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-A08, full insert sequence.
FL= gb:AK064078.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1837011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18350OsAffx.13936.1.A1_at11/112+10677080..10678983hypothetical protein
LOC_Os02g18360Os.35344.3.S1_x_at11/112+10681484..10688092transposon protein, putative, Mutator sub-class
LOC_Os02g18360Os.35344.18.S1_x_at10/112+10681484..10688092transposon protein, putative, Mutator sub-class
LOC_Os02g18360OsAffx.22940.2.S1_s_at8/112+10681484..10688092transposon protein, putative, Mutator sub-class
LOC_Os02g18360OsAffx.22940.3.S1_x_at6/112+10681484..10688092transposon protein, putative, Mutator sub-class
LOC_Os02g18360OsAffx.22940.5.S1_x_at4/112+10681484..10688092transposon protein, putative, Mutator sub-class
LOC_Os02g18360OsAffx.22940.1.S1_s_at2/112+10681484..10688092transposon protein, putative, Mutator sub-class
LOC_Os02g18370Os.51849.1.S1_at11/112+10692548..10696750transposon protein, putative, unclassified, expressed
LOC_Os02g18380Os.46751.1.S1_at8/112+10700791..1070151460S ribosomal protein L27, putative, expressed
LOC_Os02g18390OsAffx.12099.1.S1_s_at11/112+10704316..10705002expressed protein
LOC_Os02g18400OsAffx.2665.1.S1_at11/112+10705442..10705903hypothetical protein
LOC_Os02g18410Os.6656.1.S1_at11/112+10715007..10716765plasma membrane intrinsic polypeptide, putative, expressed
LOC_Os02g18420OsAffx.24304.1.S1_at11/112+10721538..10721804hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51849.1.S1_at--1138--10271Chr02:10696245..10696269 (25 bp)
TTTGCCCGAAAATTTGCCATGATGA
LOC_Os02g18370
Os.51849.1.S1_at--97--3011Chr02:10696275..10696299 (25 bp)
AATGCAGCATATTCATGCAGGAACT
LOC_Os02g18370
Os.51849.1.S1_at--959--1531Chr02:10696389..10696413 (25 bp)
AGCATCGTGGGAGCAGTAGCAATAC
LOC_Os02g18370
Os.51849.1.S1_at--659--5951Chr02:10696421..10696445 (25 bp)
GAGCAACAGCATACAGGTGGCTTGT
LOC_Os02g18370
Os.51849.1.S1_at--749--3471Chr02:10696434..10696458 (25 bp)
CAGGTGGCTTGTAAGGCACAGTGAT
LOC_Os02g18370
Os.51849.1.S1_at--940--6171Chr02:10696542..10696566 (25 bp)
GAGGAGACTATTTTGTCCAGGAAGT
LOC_Os02g18370
Os.51849.1.S1_at--446--6631Chr02:10696601..10696625 (25 bp)
GTTGTGGTAAACTTGTCTGTTAGGA
LOC_Os02g18370
Os.51849.1.S1_at--613--6331Chr02:10696658..10696682 (25 bp)
GATGCATTGTATCTATTAGCTCTCC
LOC_Os02g18370
Os.51849.1.S1_at--267--10211Chr02:10696671..10696695 (25 bp)
TATTAGCTCTCCTGTCTAAACATGC
LOC_Os02g18370
Os.51849.1.S1_at--162--2411Chr02:10696688..10696712 (25 bp)
AAACATGCATCTTGGTTCGCGGCAG
LOC_Os02g18370
Os.51849.1.S1_at--198--10051Chr02:10696726..10696750 (25 bp)
TAGTTAATTGACATCTGTGTTCGCC
LOC_Os02g18370
Target Sequence 
TTTGCCCGAAAATTTGCCATGATGAAGCAAAATGCAGCATATTCATGCAGGAACTAGACAAGATTCAAGNAGAAGTTNGA
TAACGGAGAGCAGAGAAAATGCACAGAATGATNACCCATGTCGTGAACAAGGGGCCTTGCNACAGGAGCATCGTGGGAGC
AGTAGCAATACAGAGCAAGAGCAACAGCATACAGGTGGCTTGTAAGGCACAGTGATGNTTGGTCCAAAATGNTGCAGTGG
GNTCAGTAGAGCATTACNGGGAGTGAGCCNAATTGATCTCTTTGTGNCGGGTTCTGGTCTTCTGGAGGAGACTATTTTGT
CCAGGAAGTAGAATGGNTTAGTATAGTTAGTTTAGCTGAAGTTAGTTGTGGTAAACTTGTCTGTTAGGAAAGTGTTGGTC
GAGAGCAGGAAGACGTGTAAAGATGCATTGTATCTATTAGCTCTCCTGTCTAAACATGCATCTTGGTTCGCGGCAGTATG
GGAAGCTGATAGTTAATTGACATCTGTGTTCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis