Browse Element(s) Details


OsAffx.24304.1.S1_at

Description tigr:9630.m01740
TID=OsAffx.24304.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1842011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18370Os.51849.1.S1_at11/112+10692548..10696750transposon protein, putative, unclassified, expressed
LOC_Os02g18380Os.46751.1.S1_at8/112+10700791..1070151460S ribosomal protein L27, putative, expressed
LOC_Os02g18390OsAffx.12099.1.S1_s_at11/112+10704316..10705002expressed protein
LOC_Os02g18400OsAffx.2665.1.S1_at11/112+10705442..10705903hypothetical protein
LOC_Os02g18410Os.6656.1.S1_at11/112+10715007..10716765plasma membrane intrinsic polypeptide, putative, expressed
LOC_Os02g18420OsAffx.24304.1.S1_at11/112+10721538..10721804hypothetical protein
LOC_Os02g18430OsAffx.2666.1.S1_x_at11/112+10726134..10727708Protein kinase PVPK-1, putative
LOC_Os02g18430Os.46554.2.S1_x_at1/112+10726134..10727708Protein kinase PVPK-1, putative
LOC_Os02g18440OsAffx.22940.2.S1_s_at8/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.1.S1_s_at7/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.5.S1_x_at6/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.3.S1_x_at6/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.2.S1_at3/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.5.S1_at2/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440Os.35344.3.S1_x_at2/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440Os.35344.18.S1_x_at2/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.31552.2.S1_at1/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18450Os.17566.1.S1_at10/112+10739449..10747065GTP-binding protein TypA/BipA homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24304.1.S1_at--448--1771Chr02:10721667..10721691 (25 bp)
ACCTGTCCCTCTGCTTGATCTGGGA
LOC_Os02g18420
OsAffx.24304.1.S1_at--642--8711Chr02:10721664..10721688 (25 bp)
TGTCCCTCTGCTTGATCTGGGAGAG
LOC_Os02g18420
OsAffx.24304.1.S1_at--1062--7231Chr02:10721663..10721687 (25 bp)
GTCCCTCTGCTTGATCTGGGAGAGG
LOC_Os02g18420
OsAffx.24304.1.S1_at--495--6611Chr02:10721632..10721656 (25 bp)
GATTGGAGGTGCTGCCGGAACCTTC
LOC_Os02g18420
OsAffx.24304.1.S1_at--1063--11Chr02:10721631..10721655 (25 bp)
ATTGGAGGTGCTGCCGGAACCTTCT
LOC_Os02g18420
OsAffx.24304.1.S1_at--58--10591Chr02:10721610..10721634 (25 bp)
TTCTCAAGGCCTAGCTGTCGTCATG
LOC_Os02g18420
OsAffx.24304.1.S1_at--343--9711Chr02:10721607..10721631 (25 bp)
TCAAGGCCTAGCTGTCGTCATGGTA
LOC_Os02g18420
OsAffx.24304.1.S1_at--765--2951Chr02:10721605..10721629 (25 bp)
AAGGCCTAGCTGTCGTCATGGTAGC
LOC_Os02g18420
OsAffx.24304.1.S1_at--368--891Chr02:10721604..10721628 (25 bp)
AGGCCTAGCTGTCGTCATGGTAGCC
LOC_Os02g18420
OsAffx.24304.1.S1_at--629--4451Chr02:10721602..10721626 (25 bp)
GCCTAGCTGTCGTCATGGTAGCCGC
LOC_Os02g18420
OsAffx.24304.1.S1_at--473--9991Chr02:10721599..10721623 (25 bp)
TAGCTGTCGTCATGGTAGCCGCCGC
LOC_Os02g18420
Target Sequence 
ACCTGTCCCTCTGCTTGATCTGGGAGAGGGGAGGGGATTGGAGGTGCTGCCGGAACCTTCTCAAGGCCTAGCTGTCGTCA
TGGTAGCCGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24304.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis