Browse Element(s) Details


Os.46554.2.S1_x_at

Description gb:NM_197757.1
DB_XREF= gi:37536873
TID=Os.46554.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46554 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative protein kinase (OSJNBb0089A17.15), mRNA.
PROD=putative protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4129011/11Protein kinase PVPK-1, putative, expressed
LOC_Os02g437401/11Protein kinase G11A, putative, expressed
LOC_Os02g184301/11Protein kinase PVPK-1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41240Os.3145.1.S1_at11/1110+21831481..21835370Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os10g41250Os.46876.1.S1_at11/1110+21837199..21839161expressed protein
LOC_Os10g41260Os.3141.1.S1_at11/1110+21844892..21846996MCB1 protein, putative, expressed
LOC_Os10g41260Os.3141.2.S1_at11/1110+21844892..21846996MCB1 protein, putative, expressed
LOC_Os10g41270OsAffx.30745.1.S1_x_at11/1110+21851099..21852703Lipase family protein
LOC_Os10g41280OsAffx.7910.1.S1_at3/1110+21857578..21858815hypothetical protein
LOC_Os10g41290Os.46554.2.S1_x_at11/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41290Os.46554.1.S1_at9/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41290OsAffx.2666.1.S1_x_at1/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41300OsAffx.30746.1.S1_x_at11/1110+21863441..21864257expressed protein
LOC_Os10g41310Os.2822.1.S1_at11/1110+21868647..21872487bZIP, putative, expressed
LOC_Os10g41320OsAffx.18597.1.S1_at9/1110+21876957..21878239hypothetical protein
LOC_Os10g41330Os.55386.1.A1_at11/1110+21883426..21884989AP2 domain containing protein, expressed
LOC_Os10g41330Os.46602.1.S1_at11/1110+21883426..21884989AP2 domain containing protein, expressed
LOC_Os10g41340Os.46621.1.S1_x_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41340Os.2718.1.S1_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41340Os.46621.1.S1_s_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46554.2.S1_x_at--432--7711Chr10:21862420..21862444 (25 bp)
GGGTGTTCCTGCACGAGCTCATGTA
LOC_Os10g41290
Os.46554.2.S1_x_at--1000--5091Chr10:21862430..21862454 (25 bp)
GCACGAGCTCATGTACGGCAGGACG
LOC_Os10g41290
Os.46554.2.S1_x_at--578--9611Chr10:21862438..21862462 (25 bp)
TCATGTACGGCAGGACGCCGTTCAA
LOC_Os10g41290
Os.46554.2.S1_x_at--1154--5771Chr10:21862469..21862493 (25 bp)
GACGAACCGGGCCACGCTGTTCAAC
LOC_Os10g41290
Os.46554.2.S1_x_at--334--8452Chr10:21862478..21862502 (25 bp)
GGCCACGCTGTTCAACGTCGTCGGC
LOC_Os10g41290
Os.46554.2.S1_x_at--440--2572Chr10:21862650..21862674 (25 bp)
AACTGGGCGCTCATCCGGTGCAGCA
LOC_Os10g41290
Os.46554.2.S1_x_at--203--4611Chr10:21862731..21862755 (25 bp)
GCGACGGTGATGTCCAAGCCGCCGC
LOC_Os10g41290
Os.46554.2.S1_x_at--1084--6011Chr10:21862770..21862794 (25 bp)
GAGATGGCAATCCACAGCAATTGCA
LOC_Os10g41290
Os.46554.2.S1_x_at--439--3311Chr10:21862782..21862806 (25 bp)
CACAGCAATTGCAACAGCACCAACA
LOC_Os10g41290
Os.46554.2.S1_x_at--1031--1511Chr10:21862806..21862830 (25 bp)
AGCAGCAAAAGAATGGCAGGGCCTC
LOC_Os10g41290
Os.46554.2.S1_x_at--830--2431Chr10:21862812..21862836 (25 bp)
AAAAGAATGGCAGGGCCTCCAGAGG
LOC_Os10g41290
Target Sequence 
GGGTGTTCCTGCACGAGCTCATGTACGGCAGGACGCCGTTCAAGGGGCAGACGAACCGGGCCACGCTGTTCAACGTCGTC
GGCCAGCAGCTCCGGTTCCCGGACCACCCGCCGACGAGCAACGCCGGCAGGGACCTCATCAGGGGGCTGCTCGCCAAGGA
GCCGCAGGGGCGGCTCGGCGTGAAGCGCGGCGCGGCGGAGATCAAGCAGCACCCCTTCTTCGACGGCGTCAACTGGGCGC
TCATCCGGTGCAGCACCCCGCCCGGCGTGCCCAGGGCTGTCGAGCCCGTCGCCGTCGCCGCGGCGGTGCCGGCGACGGTG
ATGTCCAAGCCGCCGCCGGTGGACACCGTCGAGATGGCAATCCACAGCAATTGCAACAGCACCAACAGCAGCAAAAGAAT
GGCAGGGCCTCCAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46554.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis