Browse Element(s) Details


OsAffx.30745.1.S1_x_at

Description tigr:9638.m03760
TID=OsAffx.30745.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative lipase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4127011/11Lipase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41240Os.3145.1.S1_at11/1110+21831481..21835370Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os10g41250Os.46876.1.S1_at11/1110+21837199..21839161expressed protein
LOC_Os10g41260Os.3141.1.S1_at11/1110+21844892..21846996MCB1 protein, putative, expressed
LOC_Os10g41260Os.3141.2.S1_at11/1110+21844892..21846996MCB1 protein, putative, expressed
LOC_Os10g41270OsAffx.30745.1.S1_x_at11/1110+21851099..21852703Lipase family protein
LOC_Os10g41280OsAffx.7910.1.S1_at3/1110+21857578..21858815hypothetical protein
LOC_Os10g41290Os.46554.2.S1_x_at11/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41290Os.46554.1.S1_at9/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41290OsAffx.2666.1.S1_x_at1/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41300OsAffx.30746.1.S1_x_at11/1110+21863441..21864257expressed protein
LOC_Os10g41310Os.2822.1.S1_at11/1110+21868647..21872487bZIP, putative, expressed
LOC_Os10g41320OsAffx.18597.1.S1_at9/1110+21876957..21878239hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009901biological_processanther dehiscence
GO:0010152biological_processpollen maturation
GO:0005737cellular_componentcytoplasm
GO:0009507cellular_componentchloroplast
GO:0004806molecular_functiontriacylglycerol lipase activity
GO:0008970molecular_functionphospholipase A1 activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30745.1.S1_x_at--744--4951Chr10:21852111..21852135 (25 bp)
GCATCACGGTGGTGGGACACAGCCT
LOC_Os10g41270
OsAffx.30745.1.S1_x_at--660--5911Chr10:21852167..21852191 (25 bp)
GAGCTCAGCGCTTGCCTGTCCGCGG
LOC_Os10g41270
OsAffx.30745.1.S1_x_at--751--8631Chr10:21852183..21852207 (25 bp)
TGTCCGCGGACGTGGCTGAACATCG
LOC_Os10g41270
OsAffx.30745.1.S1_x_at--922--1911Chr10:21852192..21852216 (25 bp)
ACGTGGCTGAACATCGCCGGCGGCC
LOC_Os10g41270
OsAffx.30745.1.S1_x_at--28--4171Chr10:21852219..21852243 (25 bp)
CGCCGATCGCCGTGGTGTCCTTCGG
LOC_Os10g41270
OsAffx.30745.1.S1_x_at--683--2571Chr10:21852302..21852326 (25 bp)
AACGTGCTCCGCGTGGTGAACGCCG
LOC_Os10g41270
OsAffx.30745.1.S1_x_at--565--1611Chr10:21852399..21852423 (25 bp)
AGCTGAGGCTGGACAGCCGCGACTC
LOC_Os10g41270
OsAffx.30745.1.S1_x_at--728--8551Chr10:21852468..21852492 (25 bp)
TGGAGGCGTACCTCCACCTGCTCGA
LOC_Os10g41270
OsAffx.30745.1.S1_x_at--400--4671Chr10:21852540..21852564 (25 bp)
GCGTGGCGCGGCTGCTGACCTACCA
LOC_Os10g41270
OsAffx.30745.1.S1_x_at--59--5851Chr10:21852556..21852580 (25 bp)
GACCTACCAGCGTCCCAACGTGAGG
LOC_Os10g41270
OsAffx.30745.1.S1_x_at--1045--1651Chr10:21852594..21852618 (25 bp)
AGCGCGCCAGGGTGCTCGGCTTCGA
LOC_Os10g41270
Target Sequence 
GCATCACGGTGGTGGGACACAGCCTCGGCGCGTCGCTCGCCGTCCTCGCCGCCGACGAGCTCAGCGCTTGCCTGTCCGCG
GACGTGGCTGAACATCGCCGGCGGCCACCGCCGATCGCCGTGGTGTCCTTCGGCGGCCCGAAGACCGGGAACCGCGCGTT
CGCCGACCGCCTCCAGAACGGCCGCGGCGTGAACGTGCTCCGCGTGGTGAACGCCGGCGACGTGGTGACGCGGGTGCCGG
CGCCGGCGATGGCGCGGGAGGGGGAGGGGCACGTGCACGCCGGCGCGGAGCTGAGGCTGGACAGCCGCGACTCGCCGTGC
CTCCGCCCGGACGCCGGGCCGGCGTGCTGCCACGACCTGGAGGCGTACCTCCACCTGCTCGACGGCTTCGCCGGCTCCGG
CCGGCCGTTCCGCGCCGACGCGAGCCGCAGCGTGGCGCGGCTGCTGACCTACCAGCGTCCCAACGTGAGGGGCGCCTACG
TCGAGCGCGCCAGGGTGCTCGGCTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30745.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis