Browse Element(s) Details


Os.3141.2.S1_at

Description gb:AK109308.1
DB_XREF= gi:32994517
TID=Os.3141.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3141 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Myb-related protein (OSJNBb0089A17.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-F01, full insert sequence.
FL= gb:AK109308.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4126011/11MCB1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41230Os.4605.1.S1_at11/1110+21822961..21824470HD-ZIP protein N terminus containing protein, expressed
LOC_Os10g41230Os.23043.1.A1_x_at2/1110+21822961..21824470HD-ZIP protein N terminus containing protein, expressed
LOC_Os10g41230Os.49759.1.S1_x_at1/1110+21822961..21824470HD-ZIP protein N terminus containing protein, expressed
LOC_Os10g41240Os.3145.1.S1_at11/1110+21831481..21835370Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os10g41250Os.46876.1.S1_at11/1110+21837199..21839161expressed protein
LOC_Os10g41260Os.3141.1.S1_at11/1110+21844892..21846996MCB1 protein, putative, expressed
LOC_Os10g41260Os.3141.2.S1_at11/1110+21844892..21846996MCB1 protein, putative, expressed
LOC_Os10g41270OsAffx.30745.1.S1_x_at11/1110+21851099..21852703Lipase family protein
LOC_Os10g41280OsAffx.7910.1.S1_at3/1110+21857578..21858815hypothetical protein
LOC_Os10g41290Os.46554.2.S1_x_at11/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41290Os.46554.1.S1_at9/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41290OsAffx.2666.1.S1_x_at1/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41300OsAffx.30746.1.S1_x_at11/1110+21863441..21864257expressed protein
LOC_Os10g41310Os.2822.1.S1_at11/1110+21868647..21872487bZIP, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3141.2.S1_at--1062--5551Chr10:21846557..21846581 (25 bp)
GAAAGGTGAGCAACCACCCTTTTTG
LOC_Os10g41260
Os.3141.2.S1_at--826--1811Chr10:21846542..21846566 (25 bp)
ACCCTTTTTGTCTGTTCTTGTATCT
LOC_Os10g41260
Os.3141.2.S1_at--65--7191Chr10:21846533..21846557 (25 bp)
GTCTGTTCTTGTATCTACTGTTCAT
LOC_Os10g41260
Os.3141.2.S1_at--434--1971Chr10:21846517..21846541 (25 bp)
ACTGTTCATTACTTGTTCCATCACC
LOC_Os10g41260
Os.3141.2.S1_at--987--9591Chr10:21846512..21846536 (25 bp)
TCATTACTTGTTCCATCACCTGATT
LOC_Os10g41260
Os.3141.2.S1_at--972--10791Chr10:21846505..21846529 (25 bp)
TTGTTCCATCACCTGATTCCTTTTT
LOC_Os10g41260
Os.3141.2.S1_at--324--10471Chr10:21846478..21846502 (25 bp)
TTACTCTGAAACTTCCAACTCACTG
LOC_Os10g41260
Os.3141.2.S1_at--1019--3751Chr10:21846475..21846499 (25 bp)
CTCTGAAACTTCCAACTCACTGTTA
LOC_Os10g41260
Os.3141.2.S1_at--162--3271Chr10:21846463..21846487 (25 bp)
CAACTCACTGTTAATTCTTGACGCA
LOC_Os10g41260
Os.3141.2.S1_at--892--9571Chr10:21846448..21846472 (25 bp)
TCTTGACGCAATTTGATGATCCGTG
LOC_Os10g41260
Os.3141.2.S1_at--232--1851Chr10:21846443..21846467 (25 bp)
ACGCAATTTGATGATCCGTGAAAGC
LOC_Os10g41260
Target Sequence 
GAAAGGTGAGCAACCACCCTTTTTGTCTGTTCTTGTATCTACTGTTCATTACTTGTTCCATCACCTGATTCCTTTTTTTT
TACTCTGAAACTTCCAACTCACTGTTAATTCTTGACGCAATTTGATGATCCGTGAAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3141.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis