Browse Element(s) Details


Os.3145.1.S1_at

Description gb:AK101939.1
DB_XREF= gi:32987148
TID=Os.3145.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.3145 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0089A17.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033074H15, full insert sequence.
FL= gb:AK101939.1 gb:AK103006.1 gb:AK060104.1 gb:AK071105.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4124011/11Dual specificity phosphatase, catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41210Os.9166.4.S1_x_at10/1110+21803800..21807068NA
LOC_Os10g41220Os.46463.1.S1_at11/1110+21807268..21812044U-box domain containing protein, expressed
LOC_Os10g41230Os.4605.1.S1_at11/1110+21822961..21824470HD-ZIP protein N terminus containing protein, expressed
LOC_Os10g41230Os.23043.1.A1_x_at2/1110+21822961..21824470HD-ZIP protein N terminus containing protein, expressed
LOC_Os10g41230Os.49759.1.S1_x_at1/1110+21822961..21824470HD-ZIP protein N terminus containing protein, expressed
LOC_Os10g41240Os.3145.1.S1_at11/1110+21831481..21835370Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os10g41250Os.46876.1.S1_at11/1110+21837199..21839161expressed protein
LOC_Os10g41260Os.3141.1.S1_at11/1110+21844892..21846996MCB1 protein, putative, expressed
LOC_Os10g41260Os.3141.2.S1_at11/1110+21844892..21846996MCB1 protein, putative, expressed
LOC_Os10g41270OsAffx.30745.1.S1_x_at11/1110+21851099..21852703Lipase family protein
LOC_Os10g41280OsAffx.7910.1.S1_at3/1110+21857578..21858815hypothetical protein
LOC_Os10g41290Os.46554.2.S1_x_at11/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41290Os.46554.1.S1_at9/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41290OsAffx.2666.1.S1_x_at1/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008138molecular_functionprotein tyrosine/serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3145.1.S1_at--1124--3071Chr10:21832041..21832065 (25 bp)
AATAATGAAACCACCGCTGTTCCTT
LOC_Os10g41240
Os.3145.1.S1_at--1072--5151Chr10:21832009..21832033 (25 bp)
GCAACCTCATTGCATTTGACGAGAA
LOC_Os10g41240
Os.3145.1.S1_at--1051--2751Chr10:21831986..21832010 (25 bp)
AAGACATTCGTCATGGTTTCCAAAT
LOC_Os10g41240
Os.3145.1.S1_at--654--711Chr10:21831946..21831970 (25 bp)
ATGATGCGGATACCTTGGCCGTTAA
LOC_Os10g41240
Os.3145.1.S1_at--601--6451Chr10:21831900..21831924 (25 bp)
GATAAGCCTAGTATACCGCGTGCAG
LOC_Os10g41240
Os.3145.1.S1_at--1110--1051Chr10:21831852..21831876 (25 bp)
AGGGTTCTCATACCTGTGGGTACGA
LOC_Os10g41240
Os.3145.1.S1_at--150--3811Chr10:21831797..21831821 (25 bp)
CTCCCTGTCCCTGAGAGTAACAATA
LOC_Os10g41240
Os.3145.1.S1_at--986--1811Chr10:21831721..21831745 (25 bp)
ACCCATGTTTGCTTCAAGGTGTCAT
LOC_Os10g41240
Os.3145.1.S1_at--428--7891Chr10:21831696..21831720 (25 bp)
GGTTAATCCATGATCGTTCGACTTG
LOC_Os10g41240
Os.3145.1.S1_at--850--10391Chr10:21831645..21831669 (25 bp)
TTTTGTCTGGCATGTCATCCGTATA
LOC_Os10g41240
Os.3145.1.S1_at--689--771Chr10:21831593..21831617 (25 bp)
ATGTGAAGTCCTTAACTCCAGTCTC
LOC_Os10g41240
Target Sequence 
AATAATGAAACCACCGCTGTTCCTTGCCACTCGCAACCTCATTGCATTTGACGAGAAGACATTCGTCATGGTTTCCAAAT
CGGACCTCGAAGGGTATGATGCGGATACCTTGGCCGTTAACGTGGGCAGTGGCTTTGTGGGAGATAAGCCTAGTATACCG
CGTGCAGTTTGCGAGCCAGGCGGCCTTTGCAGGGTTCTCATACCTGTGGGTACGATGCCGTGCCCCCCGTAAGAACAAGG
AGGCACTCCCTGTCCCTGAGAGTAACAATAGCGTGGGGAGCGAGAGCTGCTCCCTTGAGGCAGAGCAACTCGCCAAACCT
CACCCATGTTTGCTTCAAGGTGTCATGGTTAATCCATGATCGTTCGACTTGCATTCGCCGCGACCTTTCTTTTAACTTTT
TGTCTGGCATGTCATCCGTATATATTAAAGCCAAGAACATGCAAATGCAATGTGAAGTCCTTAACTCCAGTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3145.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis