Browse Element(s) Details


Os.46876.1.S1_at

Description gb:AK106294.1
DB_XREF= gi:32991503
TID=Os.46876.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46876 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0089A17.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-B09, full insert sequence.
FL= gb:AK106294.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4125011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41230Os.4605.1.S1_at11/1110+21822961..21824470HD-ZIP protein N terminus containing protein, expressed
LOC_Os10g41230Os.23043.1.A1_x_at2/1110+21822961..21824470HD-ZIP protein N terminus containing protein, expressed
LOC_Os10g41230Os.49759.1.S1_x_at1/1110+21822961..21824470HD-ZIP protein N terminus containing protein, expressed
LOC_Os10g41240Os.3145.1.S1_at11/1110+21831481..21835370Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os10g41250Os.46876.1.S1_at11/1110+21837199..21839161expressed protein
LOC_Os10g41260Os.3141.1.S1_at11/1110+21844892..21846996MCB1 protein, putative, expressed
LOC_Os10g41260Os.3141.2.S1_at11/1110+21844892..21846996MCB1 protein, putative, expressed
LOC_Os10g41270OsAffx.30745.1.S1_x_at11/1110+21851099..21852703Lipase family protein
LOC_Os10g41280OsAffx.7910.1.S1_at3/1110+21857578..21858815hypothetical protein
LOC_Os10g41290Os.46554.2.S1_x_at11/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41290Os.46554.1.S1_at9/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41290OsAffx.2666.1.S1_x_at1/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41300OsAffx.30746.1.S1_x_at11/1110+21863441..21864257expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46876.1.S1_at--927--9551Chr10:21837770..21837794 (25 bp)
TCTTCTTCACGGATCGGATTCAGAC
LOC_Os10g41250
Os.46876.1.S1_at--967--8471Chr10:21837734..21837758 (25 bp)
TGGCTACAGGGCGTACCAATCCATT
LOC_Os10g41250
Os.46876.1.S1_at--347--1091Chr10:21837727..21837751 (25 bp)
AGGGCGTACCAATCCATTCCCAGGT
LOC_Os10g41250
Os.46876.1.S1_at--800--3591Chr10:21837713..21837737 (25 bp)
CATTCCCAGGTTCCAGTACGAGAGA
LOC_Os10g41250
Os.46876.1.S1_at--791--6691Chr10:21837704..21837728 (25 bp)
GTTCCAGTACGAGAGAGGCAGCAGC
LOC_Os10g41250
Os.46876.1.S1_at--288--1911Chr10:21837663..21837687 (25 bp)
ACGTGACGGTGTCCTCGGAGAGCAG
LOC_Os10g41250
Os.46876.1.S1_at--272--9631Chr10:21837495..21837519 (25 bp)
TCAGGCTGCAGAGAATCGAGTCGAT
LOC_Os10g41250
Os.46876.1.S1_at--248--6431Chr10:21837404..21837428 (25 bp)
GATCACCGGCGCCACTTTTTTACTT
LOC_Os10g41250
Os.46876.1.S1_at--1004--8871Chr10:21837361..21837385 (25 bp)
TGAGCAGAGATAGATAGTACGGTAC
LOC_Os10g41250
Os.46876.1.S1_at--773--1171Chr10:21837346..21837370 (25 bp)
AGTACGGTACTATTTGTATTTGTGA
LOC_Os10g41250
Os.46876.1.S1_at--454--8051Chr10:21837222..21837246 (25 bp)
GGAGATCGACTGTTGCATCTGGCAA
LOC_Os10g41250
Target Sequence 
TCTTCTTCACGGATCGGATTCAGACGATCCGTACGNGTGGCTACAGGGCGTACCAATCCATTCCCAGGTTCCAGTACGAG
AGAGGCAGCAGCGACCCCNNNCTGGGCAACGTGACGGTGTCCTCGGAGAGCAGCGACGACGACGACAGCGACGTCGACGG
CGACGGCGAGCTCTCGACGAGGGGGAACTCGCCGAGGAGGGAGTCGTCGCCGGAGGTGGACGAGAACGAGGTGGACAAGA
AGGCGGAGGAGTTCATCGCCAGGTTCAGGGAGCNGATCAGGCTGCAGAGAATCGAGTCGATAAAGAAATCCGCGGGGCCG
CGTGGTGTCAAGCACGGCAAGTAGCTCGCCCGCCGCCCNCCGCCGGCGATCACCGGCGCCACTTTTTTACTTTTTTTTTT
GTTCTCGTTTTGAGCAGAGATAGATAGTACGGTACTATTTGTATTTGTGATAGCTAATTAGTAGTTATCAAGAACCACCT
GTAAACAAATTACATTCATGTAGATGATGAATGAGAGTGAGTGCATGTTCATGCTCAATTTCTGGGCAAGGAGATCGACT
GTTGCATCTGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46876.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis