Browse Element(s) Details


OsAffx.30746.1.S1_x_at

Description tigr:9638.m03763
TID=OsAffx.30746.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4130011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41250Os.46876.1.S1_at11/1110+21837199..21839161expressed protein
LOC_Os10g41260Os.3141.1.S1_at11/1110+21844892..21846996MCB1 protein, putative, expressed
LOC_Os10g41260Os.3141.2.S1_at11/1110+21844892..21846996MCB1 protein, putative, expressed
LOC_Os10g41270OsAffx.30745.1.S1_x_at11/1110+21851099..21852703Lipase family protein
LOC_Os10g41280OsAffx.7910.1.S1_at3/1110+21857578..21858815hypothetical protein
LOC_Os10g41290Os.46554.2.S1_x_at11/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41290Os.46554.1.S1_at9/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41290OsAffx.2666.1.S1_x_at1/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41300OsAffx.30746.1.S1_x_at11/1110+21863441..21864257expressed protein
LOC_Os10g41310Os.2822.1.S1_at11/1110+21868647..21872487bZIP, putative, expressed
LOC_Os10g41320OsAffx.18597.1.S1_at9/1110+21876957..21878239hypothetical protein
LOC_Os10g41330Os.55386.1.A1_at11/1110+21883426..21884989AP2 domain containing protein, expressed
LOC_Os10g41330Os.46602.1.S1_at11/1110+21883426..21884989AP2 domain containing protein, expressed
LOC_Os10g41340Os.46621.1.S1_x_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41340Os.2718.1.S1_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41340Os.46621.1.S1_s_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30746.1.S1_x_at--573--1031Chr10:21863931..21863955 (25 bp)
AGGTCGACGACGAGCGCCGGATGCT
LOC_Os10g41300
OsAffx.30746.1.S1_x_at--1001--1651Chr10:21863880..21863904 (25 bp)
AGCGCGTCCAGATGAAGCTCGCCGA
LOC_Os10g41300
OsAffx.30746.1.S1_x_at--35--9231Chr10:21863874..21863898 (25 bp)
TCCAGATGAAGCTCGCCGACGCCAA
LOC_Os10g41300
OsAffx.30746.1.S1_x_at--372--7251Chr10:21863736..21863760 (25 bp)
GTCCGACGACCACCAGCAAGTCAAG
LOC_Os10g41300
OsAffx.30746.1.S1_x_at--185--2851Chr10:21863719..21863743 (25 bp)
AAGTCAAGCCCCACGAGCCAGCAGA
LOC_Os10g41300
OsAffx.30746.1.S1_x_at--313--1871Chr10:21863707..21863731 (25 bp)
ACGAGCCAGCAGATCAGCCAGGCGA
LOC_Os10g41300
OsAffx.30746.1.S1_x_at--18--4411Chr10:21863703..21863727 (25 bp)
GCCAGCAGATCAGCCAGGCGACGAG
LOC_Os10g41300
OsAffx.30746.1.S1_x_at--609--3751Chr10:21863667..21863691 (25 bp)
CTCAGCTGCAGCACCGGCGAGAGGT
LOC_Os10g41300
OsAffx.30746.1.S1_x_at--1040--8371Chr10:21863632..21863656 (25 bp)
GGCGAGAACCCGCACATCGCGAGGG
LOC_Os10g41300
OsAffx.30746.1.S1_x_at--237--971Chr10:21863553..21863577 (25 bp)
AGGAGAGGGTGGATCTCGTCTCCAA
LOC_Os10g41300
OsAffx.30746.1.S1_x_at--605--7171Chr10:21863536..21863560 (25 bp)
GTCTCCAACCTCGAGTGCCAGCGCG
LOC_Os10g41300
Target Sequence 
AGGTCGACGACGAGCGCCGGATGCTGCGCGTCGCCGAGCTCTGGCGGGAGGAGCGCGTCCAGATGAAGCTCGCCGACGCC
AAGGCCGCCATGGAGGAGGCGCTGCGGGAGATCGCCGCCGCCTCCGCCGCCACCGCCATCGCCGACGACGACAACAGCAG
CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGTCCGACGACCACCAGCAAGTCAAGCCCCACGAGCCAGCAGATCA
GCCAGGCGACGAGCGGCGGCCAGCCTCAGCTGCAGCACCGGCGAGAGGTCGCCGGCGGCGGCGAGAACCCGCACATCGCG
AGGGGGATCAAGGGGTTCGTGGAGTTCCCGAGGGCGGTGCGCGTGCGGCTGCCGCGGGAGGAGAGGGTGGATCTCGTCTC
CAACCTCGAGTGCCAGCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30746.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis