Browse Element(s) Details


Os.2718.1.S1_at

Description gb:AK072479.1
DB_XREF= gi:32982502
TID=Os.2718.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2718 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023126M16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023126M16, full insert sequence.
FL= gb:AK072479.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4134011/11Palmitoyl protein thioesterase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41290Os.46554.2.S1_x_at11/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41290Os.46554.1.S1_at9/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41290OsAffx.2666.1.S1_x_at1/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41300OsAffx.30746.1.S1_x_at11/1110+21863441..21864257expressed protein
LOC_Os10g41310Os.2822.1.S1_at11/1110+21868647..21872487bZIP, putative, expressed
LOC_Os10g41320OsAffx.18597.1.S1_at9/1110+21876957..21878239hypothetical protein
LOC_Os10g41330Os.55386.1.A1_at11/1110+21883426..21884989AP2 domain containing protein, expressed
LOC_Os10g41330Os.46602.1.S1_at11/1110+21883426..21884989AP2 domain containing protein, expressed
LOC_Os10g41340Os.46621.1.S1_x_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41340Os.2718.1.S1_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41340Os.46621.1.S1_s_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41350OsAffx.21778.1.S1_at10/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41350OsAffx.21778.2.S1_x_at8/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41350OsAffx.21778.2.S1_at4/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41360Os.8717.1.S1_at11/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41360Os.8717.2.S1_at9/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41370Os.46620.1.S1_at10/1110+21907243..21912386WD-repeat protein 8, putative, expressed
LOC_Os10g41380Os.2729.1.S1_at11/1110+21914385..21917501expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008474molecular_functionpalmitoyl-(protein) hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2718.1.S1_at--43--10171Chr10:21892147..21892171 (25 bp)
TATCAGTGCCAGGAGGTCACCTGAG
LOC_Os10g41340
Os.2718.1.S1_at--552--6151Chr10:21892159..21892183 (25 bp)
GAGGTCACCTGAGCATCTCCAGAAG
LOC_Os10g41340
Os.2718.1.S1_at--464--5931Chr10:21892169..21892193 (25 bp)
GAGCATCTCCAGAAGTGACACGAAG
LOC_Os10g41340
Os.2718.1.S1_at--944--5631Chr10:21892185..21892209 (25 bp)
GACACGAAGAAGTACATAGTGCCAT
LOC_Os10g41340
Os.2718.1.S1_at--134--7011Chr10:21892196..21892220 (25 bp)
GTACATAGTGCCATACTTGAAACCG
LOC_Os10g41340
Os.2718.1.S1_at--175--7291Chr10:21892203..21892227 (25 bp)
GTGCCATACTTGAAACCGGACGGAT
LOC_Os10g41340
Os.2718.1.S1_at--128--5511Chr10:21892214..21892238 (25 bp)
GAAACCGGACGGATCATCCAGGTTC
LOC_Os10g41340
Os.2718.1.S1_at--1043--8111Chr10:21892220..21892244 (25 bp)
GGACGGATCATCCAGGTTCGGCATT
LOC_Os10g41340
Os.2718.1.S1_at--471--7951Chr10:21892224..21892248 (25 bp)
GGATCATCCAGGTTCGGCATTCGTC
LOC_Os10g41340
Os.2718.1.S1_at--965--571Chr10:21892229..21892253 (25 bp)
ATCCAGGTTCGGCATTCGTCGCATC
LOC_Os10g41340
Os.2718.1.S1_at--3--111Chr10:21892242..21892266 (25 bp)
ATTCGTCGCATCTTGTCGGATTGAT
LOC_Os10g41340
Target Sequence 
TATCAGTGCCAGGAGGTCACCTGAGCATCTCCAGAAGTGACACGAAGAAGTACATAGTGCCATACTTGAAACCGGACGGA
TCATCCAGGTTCGGCATTCGTCGCATCTTGTCGGATTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2718.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis