Browse Element(s) Details


Os.2729.1.S1_at

Description gb:AK121988.1
DB_XREF= gi:37991611
TID=Os.2729.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2729 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0027P10.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033109B11, full insert sequence.
FL= gb:AK121988.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4138011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41340Os.46621.1.S1_x_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41340Os.2718.1.S1_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41340Os.46621.1.S1_s_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41350OsAffx.21778.1.S1_at10/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41350OsAffx.21778.2.S1_x_at8/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41350OsAffx.21778.2.S1_at4/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41360Os.8717.1.S1_at11/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41360Os.8717.2.S1_at9/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41370Os.46620.1.S1_at10/1110+21907243..21912386WD-repeat protein 8, putative, expressed
LOC_Os10g41380Os.2729.1.S1_at11/1110+21914385..21917501expressed protein
LOC_Os10g41390Os.46804.1.S2_x_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.1.S1_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.2.S1_at10/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41400Os.56265.1.S1_at11/1110+21925094..21927446Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os10g41400Os.8003.1.S1_at9/1110+21925094..21927446Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os10g41410Os.2715.1.S1_at11/1110+21928264..21930749Nucleoside diphosphate kinase 1, putative, expressed
LOC_Os10g41420NANA10+21932185..21932823expressed protein
LOC_Os10g41430Os.46852.1.S1_at11/1110+21938911..21940946Cyclin, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2729.1.S1_at--992--7911Chr10:21916418..21916442 (25 bp)
GGTTGTTGCCAACTTTCTACAGTCT
LOC_Os10g41380
Os.2729.1.S1_at--699--5611Chr10:21917055..21917079 (25 bp)
GACAAGCTCCGTCAAATGCTCATAG
LOC_Os10g41380
Os.2729.1.S1_at--683--8031Chr10:21917127..21917151 (25 bp)
GGAGTGAAGGCCTACAACCCATGCT
LOC_Os10g41380
Os.2729.1.S1_at--383--5731Chr10:21917154..21917178 (25 bp)
GACTGCTTTGATTGCCGGAGGCGAA
LOC_Os10g41380
Os.2729.1.S1_at--454--10231Chr10:21917221..21917245 (25 bp)
TTTGGCTATTTTCGCAATCCTTTGC
LOC_Os10g41380
Os.2729.1.S1_at--962--252Chr10:21917300..21917324 (25 bp)
ATATCCTCAGCAGAAGATCCACTCT
LOC_Os10g41380
Os.2729.1.S1_at--249--1291Chr10:21917314..21917338 (25 bp)
AGATCCACTCTTGTTGTTCAGGCCA
LOC_Os10g41380
Os.2729.1.S1_at--60--10471Chr10:21917345..21917369 (25 bp)
TTACCTATCTCCTGAACATTCGTGA
LOC_Os10g41380
Os.2729.1.S1_at--431--6351Chr10:21917385..21917409 (25 bp)
GATGCGTTACTTCTGTGCTGAACAT
LOC_Os10g41380
Os.2729.1.S1_at--820--5011Chr10:21917431..21917455 (25 bp)
GCAGTACGTGATTTTAGTTCTCTCT
LOC_Os10g41380
Os.2729.1.S1_at--400--1231Chr10:21917446..21917470 (25 bp)
AGTTCTCTCTTTGGATTCTATTCAA
LOC_Os10g41380
Target Sequence 
GGTTGTTGCCAACTTTCTACAGTCTCCCCTGTTCCAGGATGAAACCAAGATGGACATCAGAGATGTGGCTAGAAATTCAC
ATGGGATGGATAATGTGCTGGAATTGTTGCTGAAGCACCAAAGAATTATTGACGAACTGCGGGACGAGAACGACAAGCTC
CGTCAAATGCTCATAGAAGAACTCAAGGTTTCACCTTCCAAGTTACAATTAGATCATAAAAATGGAGTGAAGGCCTACAA
CCCATGCTCGGACTGCTTTGATTGCCGGAGGCGAAGTCGAAAAACAAGAAGATGATAATGGAATTGCAGGATTGCATTTT
GGCTATTTTCGCAATCCTTTGCAATTTCTTGGATTCTTCAGTAGCTAAATAGTTCATCGGATTAGCTTTCGACATAATAT
CCTCAGCAGAAGATCCACTCTTGTTGTTCAGGCCAGTTATGTTACCTATCTCCTGAACATTCGTGAACACTTGATCCAAT
TGATGCGTTACTTCTGTGCTGAACATGCGCAGACTGATAGCATCACAGCAGTACGTGATTTTAGTTCTCTCTTTGGATTC
TATTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2729.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis