Browse Element(s) Details


Os.2715.1.S1_at

Description gb:AK072751.1
DB_XREF= gi:32982774
TID=Os.2715.1
CNT=109
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2715 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative nucleoside diphosphate kinase (OSJNBa0027P10.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023136C24, full insert sequence.
FL= gb:AK072751.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4141011/11Nucleoside diphosphate kinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41360Os.8717.1.S1_at11/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41360Os.8717.2.S1_at9/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41370Os.46620.1.S1_at10/1110+21907243..21912386WD-repeat protein 8, putative, expressed
LOC_Os10g41380Os.2729.1.S1_at11/1110+21914385..21917501expressed protein
LOC_Os10g41390Os.46804.1.S2_x_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.1.S1_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.2.S1_at10/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41400Os.56265.1.S1_at11/1110+21925094..21927446Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os10g41400Os.8003.1.S1_at9/1110+21925094..21927446Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os10g41410Os.2715.1.S1_at11/1110+21928264..21930749Nucleoside diphosphate kinase 1, putative, expressed
LOC_Os10g41420NANA10+21932185..21932823expressed protein
LOC_Os10g41430Os.46852.1.S1_at11/1110+21938911..21940946Cyclin, N-terminal domain containing protein, expressed
LOC_Os10g41440Os.2720.1.S1_at11/1110+21944875..21948320KH domain-containing protein, putative, expressed
LOC_Os10g41450Os.52788.1.S1_at10/1110+21948992..21951672mediator complex subunit SOH1, putative, expressed
LOC_Os10g41460Os.22666.1.S1_at11/1110+21954678..21956227expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009585biological_processred, far-red light phototransduction
GO:0009734biological_processauxin mediated signaling pathway
GO:0042542biological_processresponse to hydrogen peroxide
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0004550molecular_functionnucleoside diphosphate kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2715.1.S1_at--323--6131Chr10:21930078..21930102 (25 bp)
GAGGGCTCGTGGAGTACATCGTCTC
LOC_Os10g41410
Os.2715.1.S1_at--921--3631Chr10:21929945..21929966 (22 bp)
CTTCGCTGTCGACATTGGCAGGAAT
LOC_Os10g41410
Os.2715.1.S1_at--886--751Chr10:21928624..21928648 (25 bp)
ATGTCATCCACGGAAGCGACTCGGT
LOC_Os10g41410
Os.2715.1.S1_at--405--6051Chr10:21928583..21928607 (25 bp)
GAGATTGCTCTGTGGTTCCCTGAGG
LOC_Os10g41410
Os.2715.1.S1_at--1125--8011Chr10:21928546..21928570 (25 bp)
GGAGGAGCAACCAGCACCCATGGAT
LOC_Os10g41410
Os.2715.1.S1_at--727--6611Chr10:21928481..21928505 (25 bp)
GTTGGCATCTGAAGATCTACCGTGC
LOC_Os10g41410
Os.2715.1.S1_at--838--6411Chr10:21928468..21928492 (25 bp)
GATCTACCGTGCTATTTAGCTGCTA
LOC_Os10g41410
Os.2715.1.S1_at--721--1271Chr10:21928425..21928449 (25 bp)
AGATCAGCATCTCAAGAACCTTTGT
LOC_Os10g41410
Os.2715.1.S1_at--48--1451Chr10:21928411..21928435 (25 bp)
AGAACCTTTGTCTGTGCGAACTGAA
LOC_Os10g41410
Os.2715.1.S1_at--132--4991Chr10:21928359..21928383 (25 bp)
GCATGCATTTACCAGTTGCTCTTGA
LOC_Os10g41410
Os.2715.1.S1_at--1083--4931Chr10:21928299..21928323 (25 bp)
GCATTGCATGGTGTTTGAAGCCTTA
LOC_Os10g41410
Target Sequence 
GAGGGCTCGTGGAGTACATCGTCTCCGGCCCCGTCGTCGCCATGGTCTGGGAGGGCAAGCAGGTCGTCTCCACCGGCCGC
AAGCTCGTCGGGGCCACCAACCCCCTGGCCGCTGAGCCGGGCACCATCCGTGGCGACTTCGCTGTCGACATTGGCAGGAA
TGTCATCCACGGAAGCGACTCGGTCGAGAACGCCAGGAAGGAGATTGCTCTGTGGTTCCCTGAGGGCATCGCCGAGTGGA
GGAGCAACCAGCACCCATGGATCTATGAGGTCTAAAATGCCTTGTCACTATGAACCTGGAGAGTTGGCATCTGAAGATCT
ACCGTGCTATTTAGCTGCTATTTTATAGTTGAGAATTGAGATCAGCATCTCAAGAACCTTTGTCTGTGCGAACTGAAGTT
TTTCTTCATTATGTTGCATGTTATGCATGCATTTACCAGTTGCTCTTGATATATGGTATTGCTTTAANTCCTTTGATGTG
GAGTTGCATTGCATGGTGTTTGAAGCCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2715.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis