Browse Element(s) Details


Os.46620.1.S1_at

Description gb:AK122086.1
DB_XREF= gi:37991732
TID=Os.46620.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46620 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative WD-40 protein (OSJNBa0027P10.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033122L07, full insert sequence.
FL= gb:AK122086.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4137010/11WD-repeat protein 8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41330Os.55386.1.A1_at11/1110+21883426..21884989AP2 domain containing protein, expressed
LOC_Os10g41330Os.46602.1.S1_at11/1110+21883426..21884989AP2 domain containing protein, expressed
LOC_Os10g41340Os.46621.1.S1_x_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41340Os.2718.1.S1_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41340Os.46621.1.S1_s_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41350OsAffx.21778.1.S1_at10/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41350OsAffx.21778.2.S1_x_at8/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41350OsAffx.21778.2.S1_at4/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41360Os.8717.1.S1_at11/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41360Os.8717.2.S1_at9/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41370Os.46620.1.S1_at10/1110+21907243..21912386WD-repeat protein 8, putative, expressed
LOC_Os10g41380Os.2729.1.S1_at11/1110+21914385..21917501expressed protein
LOC_Os10g41390Os.46804.1.S2_x_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.1.S1_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.2.S1_at10/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41400Os.56265.1.S1_at11/1110+21925094..21927446Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os10g41400Os.8003.1.S1_at9/1110+21925094..21927446Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os10g41410Os.2715.1.S1_at11/1110+21928264..21930749Nucleoside diphosphate kinase 1, putative, expressed
LOC_Os10g41420NANA10+21932185..21932823expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46620.1.S1_at--534--1811Chr10:21907800..21907824 (25 bp)
ACGCCTTGTTTTCTGCACGGAGAGT
LOC_Os10g41370
Os.46620.1.S1_at--1143--471Chr10:21907752..21907776 (25 bp)
ATCTGGTGCATGCTGCGTCAACGTT
LOC_Os10g41370
Os.46620.1.S1_at--1031--8151Chr10:21907693..21907717 (25 bp)
GGAACTCAGATGGAACTTGCCTCCT
LOC_Os10g41370
Os.46620.1.S1_at--347--5311Chr10:21907665..21907689 (25 bp)
GAAGGACCGTGATTCTTTCTGCTGT
LOC_Os10g41370
Os.46620.1.S1_at--405--5011Chr10:21907564..21907588 (25 bp)
GCAGGCCTTGCTCTAACAATGGGAT
LOC_Os10g41370
Os.46620.1.S1_at--157--1571Chr10:21907426..21907450 (25 bp)
AGCTTTGTATGCCTTGCTCTAACAA
LOC_Os10g41370
Os.46620.1.S1_at--617--1411Chr10:21907392..21907416 (25 bp)
AGACACATGTTTCTTTCCGCTTTAA
LOC_Os10g41370
Os.46620.1.S1_at--622--1391Chr10:21907358..21907382 (25 bp)
AGACGCTGTCGTTGTAGGCTGCATC
LOC_Os10g41370
Os.46620.1.S1_at--131--9951Chr10:21907301..21907325 (25 bp)
TACGCTCCTTGAAACTGGCTAGATT
LOC_Os10g41370
Os.46620.1.S1_at--626--8191Chr10:21907250..21907274 (25 bp)
GGAATCTTTACTCCATTTAACGTGT
LOC_Os10g41370
Os.46620.1.S1_at--181--7451Chr10:21907229..21907253 (25 bp)
GTGTAATATCCGTTTTCCAGCGTTG
NONE
Target Sequence 
ACGCCTTGTTTTCTGCACGGAGAGTNCGCACCTGTACATGTGGACACCATCTGGTGCATGCTGCGTCAACGTTCCGTTGC
CAAACTTTCGGGTTGTGGACTTGAAATGGAACTCAGATGGAACTTGCCTCCTCCTGAAGGACCGTGATTCTTTCTGCTGT
GCCGCAATTGTCTCTCCTTTGCCAGAGGAAGAAGAGGCTGATCAATCTGATGTTACCTCAGAAGATGAATGAACTTGCAG
GCCTTGCTCTAACAATGGGATGTGCAGCTTTTAATCAGTGGATCTACATTTGTATCATATCGATAGATGTACCTGGGTAA
CAGCTTGTTCTGAAGTTGCTGATCGATCTGATGATAGCTCAGAAGATGAATGTGAGCTTTGTATGCCTTGCTCTAACAAT
GGGAGGGAAGACACATGTTTCTTTCCGCTTTAAAACACATAGAGACGCTGTCGTTGTAGGCTGCATCTGATATTCTTAAA
CCATCTTTGCTACACACCCTACGCTCCTTGAAACTGGCTAGATTGTTTTTTTGTAGATGTCAGTAAACGTGGAATCTTTA
CTCCATTTAACGTGTAATATCCGTTTTCCAGCGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46620.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis