Browse Element(s) Details


OsAffx.21778.2.S1_at

Description gb:NM_190353.1
DB_XREF= gi:34907789
GEN=P0703B11.15
TID=OsAffx.21778.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0703B11.15 (P0703B11.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g413504/11transposon protein, putative, Pong sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41310Os.2822.1.S1_at11/1110+21868647..21872487bZIP, putative, expressed
LOC_Os10g41320OsAffx.18597.1.S1_at9/1110+21876957..21878239hypothetical protein
LOC_Os10g41330Os.55386.1.A1_at11/1110+21883426..21884989AP2 domain containing protein, expressed
LOC_Os10g41330Os.46602.1.S1_at11/1110+21883426..21884989AP2 domain containing protein, expressed
LOC_Os10g41340Os.46621.1.S1_x_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41340Os.2718.1.S1_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41340Os.46621.1.S1_s_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41350OsAffx.21778.1.S1_at10/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41350OsAffx.21778.2.S1_x_at8/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41350OsAffx.21778.2.S1_at4/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41360Os.8717.1.S1_at11/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41360Os.8717.2.S1_at9/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41370Os.46620.1.S1_at10/1110+21907243..21912386WD-repeat protein 8, putative, expressed
LOC_Os10g41380Os.2729.1.S1_at11/1110+21914385..21917501expressed protein
LOC_Os10g41390Os.46804.1.S2_x_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.1.S1_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.2.S1_at10/1110+21918063..21923580Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21778.2.S1_at--91--4392Chr10:21896209..21896233 (25 bp)
CCAAGCTTCAGCGATGTGCGGCGAA
LOC_Os10g41350
OsAffx.21778.2.S1_at--510--2714Chr10:21896211..21896235 (25 bp)
AAGCTTCAGCGATGTGCGGCGAAGA
LOC_Os10g41350
OsAffx.21778.2.S1_at--198--4913Chr10:21896213..21896237 (25 bp)
GCTTCAGCGATGTGCGGCGAAGAAA
LOC_Os10g41350
OsAffx.21778.2.S1_at--233--4633Chr10:21896219..21896242 (24 bp)
GCGATGTGCGGCGAAGAAATGCTTA
LOC_Os10g41350
OsAffx.21778.2.S1_at--473--5371Chr01:35350751..35350775 (25 bp)
GAAGAAATGCTTATATCCGAGCCAA
NONE
OsAffx.21778.2.S1_at--602--5571Chr01:35350748..35350772 (25 bp)
GAAATGCTTATATCCGAGCCAAACC
NONE
OsAffx.21778.2.S1_at--180--631Chr01:35350745..35350769 (25 bp)
ATGCTTATATCCGAGCCAAACCAAT
NONE
OsAffx.21778.2.S1_at--294--9071Chr01:35350744..35350768 (25 bp)
TGCTTATATCCGAGCCAAACCAATC
NONE
OsAffx.21778.2.S1_at--1013--3651Chr01:35350742..35350766 (25 bp)
CTTATATCCGAGCCAAACCAATCCA
NONE
OsAffx.21778.2.S1_at--353--2651Chr01:35350727..35350751 (25 bp)
AACCAATCCATAGTCAGCTTAAAAA
NONE
OsAffx.21778.2.S1_at--139--3171Chr01:35350724..35350748 (25 bp)
CAATCCATAGTCAGCTTAAAAATGA
NONE
Target Sequence 
CCAAGCTTCAGCGATGTGCGGCGAAGAAATGCTTATATCCGAGCCAAACCAATCCATAGTCAGCTTAAAAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21778.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis