Browse Element(s) Details


Os.46804.2.S1_at

Description gb:NM_197767.1
DB_XREF= gi:37536893
TID=Os.46804.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46804 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative cell cycle protein kinase (OSJNBa0027P10.15), mRNA.
PROD=putative cell cycle protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4139010/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41350OsAffx.21778.1.S1_at10/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41350OsAffx.21778.2.S1_x_at8/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41350OsAffx.21778.2.S1_at4/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41360Os.8717.1.S1_at11/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41360Os.8717.2.S1_at9/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41370Os.46620.1.S1_at10/1110+21907243..21912386WD-repeat protein 8, putative, expressed
LOC_Os10g41380Os.2729.1.S1_at11/1110+21914385..21917501expressed protein
LOC_Os10g41390Os.46804.1.S2_x_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.1.S1_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.2.S1_at10/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41400Os.56265.1.S1_at11/1110+21925094..21927446Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os10g41400Os.8003.1.S1_at9/1110+21925094..21927446Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os10g41410Os.2715.1.S1_at11/1110+21928264..21930749Nucleoside diphosphate kinase 1, putative, expressed
LOC_Os10g41420NANA10+21932185..21932823expressed protein
LOC_Os10g41430Os.46852.1.S1_at11/1110+21938911..21940946Cyclin, N-terminal domain containing protein, expressed
LOC_Os10g41440Os.2720.1.S1_at11/1110+21944875..21948320KH domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46804.2.S1_at--488--7771Chr10:21922763..21922787 (25 bp)
GGTGACACTCCTGTACTTCATAATT
LOC_Os10g41390
Os.46804.2.S1_at--779--3031Chr10:21922792..21922816 (25 bp)
AATCGCCTTTTGGTGGAGATCCTGA
LOC_Os10g41390
Os.46804.2.S1_at--656--2271Chr10:21923133..21923157 (25 bp)
AAATCGTTGCGCTCAGTGGATCTCA
LOC_Os10g41390
Os.46804.2.S1_at--445--4471Chr10:21923186..21923210 (25 bp)
GCCGGAGTTCTTCAAGTCGATACCT
LOC_Os10g41390
Os.46804.2.S1_at--317--6491Chr10:21923204..21923228 (25 bp)
GATACCTGACTCATTGTTTGATCTT
LOC_Os10g41390
Os.46804.2.S1_at--178--2831Chr10:21923235..21923259 (25 bp)
AAGTGCTTATCAGTCAACCCCAGGT
LOC_Os10g41390
Os.46804.2.S1_at--501--6171Chr10:21923274..21923298 (25 bp)
GAGGATGCTCTGATGCACGACTTCT
LOC_Os10g41390
Os.46804.2.S1_at--885--10271Chr10:21923298..21923322 (25 bp)
TTTGCTCCGTGCCATGATCTAATTC
LOC_Os10g41390
Os.46804.2.S1_at--319--1671Chr10:21923348..21923372 (25 bp)
AGCCCCTTCTAATAATCTGCCATGT
LOC_Os10g41390
Os.46804.2.S1_at--555--9491Chr10:21923363..21923387 (25 bp)
TCTGCCATGTTTGCCTCAAGACAAA
LOC_Os10g41390
Os.46804.2.S1_at--280--9171Chr10:21923428..21923676 (25 bp)
TGCCGACTACTGTTAACTCTACTGA
NONE
Target Sequence 
GGTGACACTCCTGTACTTCATAATTGGCAAATCGCCTTTTGGTGGAGATCCTGAACAGAACATCAAGGAAATAGCAAAGC
TTAGAGGCAGCGAAGAACTATGGGAGGTGGCGAAACTGCACAACTGTGAATCTTCCTACCCATCGGACCTATTCGATGCC
AAATCGTTGCGCTCAGTGGATCTCAGGGAGTGGTGTGCAGCCAATACGCGCAGGCCGGAGTTCTTCAAGTCGATACCTGA
CTCATTGTTTGATCTTGTAGACAAGTGCTTATCAGTCAACCCCAGGTGCAGGATCACATCAGAGGATGCTCTGATGCACG
ACTTCTTTGCTCCGTGCCATGATCTAATTCGGCAGCACAGGCTTGCTAGAAGGCCAGCCCCTTCTAATAATCTGCCATGT
TTGCCTCAAGACAAATCGGTCAAGGCAAACGAGTCGAAGCGATCTTCTTCCACCGTGCCGACTACTGTTAACTCTACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46804.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis