Browse Element(s) Details


OsAffx.21778.1.S1_at

Description gb:NM_197763.1
DB_XREF= gi:37536885
TID=OsAffx.21778.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0027P10.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4135010/11transposon protein, putative, Pong sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41310Os.2822.1.S1_at11/1110+21868647..21872487bZIP, putative, expressed
LOC_Os10g41320OsAffx.18597.1.S1_at9/1110+21876957..21878239hypothetical protein
LOC_Os10g41330Os.55386.1.A1_at11/1110+21883426..21884989AP2 domain containing protein, expressed
LOC_Os10g41330Os.46602.1.S1_at11/1110+21883426..21884989AP2 domain containing protein, expressed
LOC_Os10g41340Os.46621.1.S1_x_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41340Os.2718.1.S1_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41340Os.46621.1.S1_s_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41350OsAffx.21778.1.S1_at10/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41350OsAffx.21778.2.S1_x_at8/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41350OsAffx.21778.2.S1_at4/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41360Os.8717.1.S1_at11/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41360Os.8717.2.S1_at9/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41370Os.46620.1.S1_at10/1110+21907243..21912386WD-repeat protein 8, putative, expressed
LOC_Os10g41380Os.2729.1.S1_at11/1110+21914385..21917501expressed protein
LOC_Os10g41390Os.46804.1.S2_x_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.1.S1_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.2.S1_at10/1110+21918063..21923580Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21778.1.S1_at--93--4391NONE
CCAAGCTTCAGCGATATGTGTACGA
NONE
OsAffx.21778.1.S1_at--781--773Chr10:21896917..21896941 (25 bp)
ATGTGTACGATTTATGAGCTAGCAG
LOC_Os10g41350
OsAffx.21778.1.S1_at--454--5912Chr10:21896932..21896956 (25 bp)
GAGCTAGCAGTTGTCTCAACCTTTG
LOC_Os10g41350
OsAffx.21778.1.S1_at--643--7331Chr10:21896978..21897002 (25 bp)
GTGCAGTGCAGAATGACTCAGTAGT
LOC_Os10g41350
OsAffx.21778.1.S1_at--337--7411Chr10:21897447..21897471 (25 bp)
GTGTCGAGTGAAGAACCCCATGCCG
LOC_Os10g41350
OsAffx.21778.1.S1_at--155--1891Chr10:21897481..21897505 (25 bp)
ACGATGTTGGGTTTGATGGCACCAC
LOC_Os10g41350
OsAffx.21778.1.S1_at--829--6231Chr10:21897495..21897519 (25 bp)
GATGGCACCACAGACTGTCGACGAA
LOC_Os10g41350
OsAffx.21778.1.S1_at--1112--5711Chr10:21897507..21897531 (25 bp)
GACTGTCGACGAAGGGACCGATCAA
LOC_Os10g41350
OsAffx.21778.1.S1_at--150--851Chr10:21897849..21897868 (20 bp)
ATGGAAGCTCCATTTTTCTTGCTGG
LOC_Os10g41350
OsAffx.21778.1.S1_at--842--10611Chr10:21897862..21897886 (25 bp)
TTGCTGGAGGTGAGGGTTCCCATCC
LOC_Os10g41350
OsAffx.21778.1.S1_at--214--2831Chr10:21897894..21897918 (25 bp)
AAGTACTCCACTAAGCACCAGTTTT
LOC_Os10g41350
Target Sequence 
CCAAGCTTCAGCGATATGTGTACGATTTATGAGCTAGCAGTTGTCTCAACCTTTGAAGGAGGCCTTACTAAAATAAGTGC
AGTGCAGAATGACTCAGTAGTCAGGATGGCCGGGGAATGCAGAAGAGATCGTAGGTGTCGAGTGAAGAACCCCATGCCGA
AGAAGAAGACGATGTTGGGTTTGATGGCACCACAGACTGTCGACGAAGGGACCGATCAAGGTGATGTCAATGGAAGCTCC
ATTTTTCTTGCTGGAGGTGAGGGTTCCCATCCCTCACCCAAGTACTCCACTAAGCACCAGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21778.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis