Browse Element(s) Details


Os.46602.1.S1_at

Description gb:AY341826.1
DB_XREF= gi:33519165
TID=Os.46602.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46602 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP28 mRNA, complete cds.
PROD=AP2 domain-containing protein AP28
FL= gb:AY341826.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4133011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41280OsAffx.7910.1.S1_at3/1110+21857578..21858815hypothetical protein
LOC_Os10g41290Os.46554.2.S1_x_at11/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41290Os.46554.1.S1_at9/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41290OsAffx.2666.1.S1_x_at1/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41300OsAffx.30746.1.S1_x_at11/1110+21863441..21864257expressed protein
LOC_Os10g41310Os.2822.1.S1_at11/1110+21868647..21872487bZIP, putative, expressed
LOC_Os10g41320OsAffx.18597.1.S1_at9/1110+21876957..21878239hypothetical protein
LOC_Os10g41330Os.55386.1.A1_at11/1110+21883426..21884989AP2 domain containing protein, expressed
LOC_Os10g41330Os.46602.1.S1_at11/1110+21883426..21884989AP2 domain containing protein, expressed
LOC_Os10g41340Os.46621.1.S1_x_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41340Os.2718.1.S1_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41340Os.46621.1.S1_s_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41350OsAffx.21778.1.S1_at10/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41350OsAffx.21778.2.S1_x_at8/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41350OsAffx.21778.2.S1_at4/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41360Os.8717.1.S1_at11/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41360Os.8717.2.S1_at9/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41370Os.46620.1.S1_at10/1110+21907243..21912386WD-repeat protein 8, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009873biological_processethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46602.1.S1_at--170--5071Chr10:21884241..21884462 (25 bp)
GCAGCTGTTCGTAATCGATTTGGCT
LOC_Os10g41330
Os.46602.1.S1_at--706--71Chr10:21884492..21884738 (25 bp)
ATTGCTGCTCAGAACACGTGATTTT
LOC_Os10g41330
Os.46602.1.S1_at--267--6551Chr10:21884733..21884757 (25 bp)
GATTTTGCTTTTGACTATGCTATTT
LOC_Os10g41330
Os.46602.1.S1_at--582--6431Chr10:21884793..21884817 (25 bp)
GATCATATCACCGAAAAGACTAGCT
LOC_Os10g41330
Os.46602.1.S1_at--890--3711Chr10:21884812..21884836 (25 bp)
CTAGCTAGGCGCATGGAGTAGTACT
LOC_Os10g41330
Os.46602.1.S1_at--342--1191Chr10:21884828..21884852 (25 bp)
AGTAGTACTGGAAACAAGCTCTGCT
LOC_Os10g41330
Os.46602.1.S1_at--1058--2691Chr10:21884843..21884867 (25 bp)
AAGCTCTGCTAAGGCCCTCTTTGTT
LOC_Os10g41330
Os.46602.1.S1_at--243--5691Chr10:21884885..21884909 (25 bp)
GACTAGACTTTTAAGCCAGCTGTGG
LOC_Os10g41330
Os.46602.1.S1_at--235--4331Chr10:21884900..21884924 (25 bp)
CCAGCTGTGGTTAATCTAGGCCCAT
LOC_Os10g41330
Os.46602.1.S1_at--709--3591Chr10:21884939..21884963 (25 bp)
CATTAGCTGTAATTTTTCTCGAAGT
LOC_Os10g41330
Os.46602.1.S1_at--500--4111Chr10:21884958..21884982 (25 bp)
CGAAGTTATATATTTCTTGCACTAA
LOC_Os10g41330
Target Sequence 
GCAGCTGTTCGTAATCGATTTGGCTTTCGGCCAAATATTGAATTCTTTCGTTCTATTGCTGCTCAGAACACGTGATTTTG
CTTTTGACTATGCTATTTGATGATTAAACAGAGAAGAAATATTCGTCTTACAAGATCATATCACCGAAAAGACTAGCTAG
GCGCATGGAGTAGTACTGGAAACAAGCTCTGCTAAGGCCCTCTTTGTTTAGGCTTAAGCTTATTGGACTAGACTTTTAAG
CCAGCTGTGGTTAATCTAGGCCCATTTTGGAAAAAAAAACATTAGCTGTAATTTTTCTCGAAGTTATATATTTCTTGCAC
TAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis