Browse Element(s) Details


OsAffx.7910.1.S1_at

Description tigr:9638.m03761
TID=OsAffx.7910.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g412803/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41240Os.3145.1.S1_at11/1110+21831481..21835370Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os10g41250Os.46876.1.S1_at11/1110+21837199..21839161expressed protein
LOC_Os10g41260Os.3141.1.S1_at11/1110+21844892..21846996MCB1 protein, putative, expressed
LOC_Os10g41260Os.3141.2.S1_at11/1110+21844892..21846996MCB1 protein, putative, expressed
LOC_Os10g41270OsAffx.30745.1.S1_x_at11/1110+21851099..21852703Lipase family protein
LOC_Os10g41280OsAffx.7910.1.S1_at3/1110+21857578..21858815hypothetical protein
LOC_Os10g41290Os.46554.2.S1_x_at11/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41290Os.46554.1.S1_at9/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41290OsAffx.2666.1.S1_x_at1/1110+21860262..21863051Protein kinase PVPK-1, putative, expressed
LOC_Os10g41300OsAffx.30746.1.S1_x_at11/1110+21863441..21864257expressed protein
LOC_Os10g41310Os.2822.1.S1_at11/1110+21868647..21872487bZIP, putative, expressed
LOC_Os10g41320OsAffx.18597.1.S1_at9/1110+21876957..21878239hypothetical protein
LOC_Os10g41330Os.55386.1.A1_at11/1110+21883426..21884989AP2 domain containing protein, expressed
LOC_Os10g41330Os.46602.1.S1_at11/1110+21883426..21884989AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7910.1.S1_at--104--6411Chr10:21857268..21857292 (25 bp)
GATCTGGTCTTCCATGGCCAGCAAG
NONE
OsAffx.7910.1.S1_at--783--8751Chr10:21857301..21857325 (25 bp)
TGTAGATCTCAGGATCTCTCAACCC
NONE
OsAffx.7910.1.S1_at--360--9351Chr10:21857330..21857354 (25 bp)
TCGAATTCGTCCAACCCGAGTGGAA
NONE
OsAffx.7910.1.S1_at--112--5451Chr10:21857352..21857376 (25 bp)
GAACCGCTCGCTGAGAGGAGAGATC
NONE
OsAffx.7910.1.S1_at--310--4471Chr10:21857449..21857473 (25 bp)
GCCTCCGATCGATTCCGCGGAGATA
NONE
OsAffx.7910.1.S1_at--729--3951Chr10:21857466..21857490 (25 bp)
CGGAGATATCTATGGGCTTTCCTCT
NONE
OsAffx.7910.1.S1_at--653--1931Chr10:21857508..21857532 (25 bp)
ACGGCAGCGCACACTAGGTCATCAA
NONE
OsAffx.7910.1.S1_at--1059--2011Chr10:21857520..21857544 (25 bp)
ACTAGGTCATCAACGGGCGGATCGC
NONE
OsAffx.7910.1.S1_at--619--2051Chr10:21857630..21857654 (25 bp)
ACTTCTCGTCTGACGAATCTGCCGT
LOC_Os10g41280
OsAffx.7910.1.S1_at--674--5251Chr10:21857644..21857668 (25 bp)
GAATCTGCCGTCATCGGTTGGGATT
LOC_Os10g41280
OsAffx.7910.1.S1_at--241--10251Chr10:21857673..21857697 (25 bp)
TTTGGTAGTGCGATTGTTGGTGTTC
LOC_Os10g41280
Target Sequence 
GATCTGGTCTTCCATGGCCAGCAAGGGAAATTCTGTAGATCTCAGGATCTCTCAACCCCCCCTCGAATTCGTCCAACCCG
AGTGGAACCGCTCGCTGAGAGGAGAGATCAAGAGGTTGGTGGTGGTGCTCTGCTCGGCGGCGATGGTATCCTCCTCCTCC
CCAACCTGCTTGGTCCACGCCGCCTCCGATCGATTCCGCGGAGATATCTATGGGCTTTCCTCTCGCCTCCCCGCGCCGCC
ACGGCAGCGCACACTAGGTCATCAACGGGCGGATCGCTGGGCGGGATCAGCCGCCCCCATCGATCTCGCCATGGCGGCGA
GGCGAGTCGTCAGCACCCTCACTACGCTGCGCTGCGCCACCCACTTCTCGTCTGACGAATCTGCCGTCATCGGTTGGGAT
TGGGATTTGGTAGTGCGATTGTTGGTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis