Browse Element(s) Details


Os.4605.1.S1_at

Description gb:AK065404.1
DB_XREF= gi:32975422
TID=Os.4605.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4605 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) homeodomain leucine zipper protein hox1 (OSJNBb0089A17.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013006I17, full insert sequence.
FL= gb:AK065404.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4123011/11HD-ZIP protein N terminus containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41190Os.26817.1.S1_at11/1110+21794588..21798099Hexose carrier protein HEX6, putative, expressed
LOC_Os10g41200Os.9166.1.S1_a_at11/1110+21798750..21801974ZmMybst1, putative, expressed
LOC_Os10g41210Os.9166.4.S1_x_at10/1110+21803800..21807068NA
LOC_Os10g41220Os.46463.1.S1_at11/1110+21807268..21812044U-box domain containing protein, expressed
LOC_Os10g41230Os.4605.1.S1_at11/1110+21822961..21824470HD-ZIP protein N terminus containing protein, expressed
LOC_Os10g41230Os.23043.1.A1_x_at2/1110+21822961..21824470HD-ZIP protein N terminus containing protein, expressed
LOC_Os10g41230Os.49759.1.S1_x_at1/1110+21822961..21824470HD-ZIP protein N terminus containing protein, expressed
LOC_Os10g41240Os.3145.1.S1_at11/1110+21831481..21835370Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os10g41250Os.46876.1.S1_at11/1110+21837199..21839161expressed protein
LOC_Os10g41260Os.3141.1.S1_at11/1110+21844892..21846996MCB1 protein, putative, expressed
LOC_Os10g41260Os.3141.2.S1_at11/1110+21844892..21846996MCB1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009735biological_processresponse to cytokinin stimulus
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4605.1.S1_at--641--6151Chr10:21824172..21824196 (25 bp)
GAGGTCGTCGGCGTAGAGACCCCAC
LOC_Os10g41230
Os.4605.1.S1_at--702--4631Chr10:21824182..21824206 (25 bp)
GCGTAGAGACCCCACTACTGATTAA
LOC_Os10g41230
Os.4605.1.S1_at--636--1351Chr10:21824186..21824210 (25 bp)
AGAGACCCCACTACTGATTAATTAG
LOC_Os10g41230
Os.4605.1.S1_at--914--5771Chr10:21824189..21824213 (25 bp)
GACCCCACTACTGATTAATTAGTTA
LOC_Os10g41230
Os.4605.1.S1_at--1105--6011Chr10:21824218..21824242 (25 bp)
GAGATGAGTAGTGGCTTTTTCTTAA
LOC_Os10g41230
Os.4605.1.S1_at--569--7531Chr10:21824228..21824252 (25 bp)
GTGGCTTTTTCTTAATTAGCAGGGT
LOC_Os10g41230
Os.4605.1.S1_at--1141--10151Chr10:21824367..21824391 (25 bp)
TATCTCTCACTTCACCCTGTTTGTT
LOC_Os10g41230
Os.4605.1.S1_at--1107--3351Chr10:21824379..21824403 (25 bp)
CACCCTGTTTGTTGTTTACTCAGCA
LOC_Os10g41230
Os.4605.1.S1_at--554--4271Chr10:21824382..21824406 (25 bp)
CCTGTTTGTTGTTTACTCAGCAAAG
LOC_Os10g41230
Os.4605.1.S1_at--819--10311Chr10:21824393..21824417 (25 bp)
TTTACTCAGCAAAGAATATGGTGTC
LOC_Os10g41230
Os.4605.1.S1_at--1078--8611Chr10:21824411..21824435 (25 bp)
TGGTGTCTTTGTATAAAGTGATGCA
LOC_Os10g41230
Target Sequence 
GAGGTCGTCGGCGTAGAGACCCCACTACTGATTAATTAGTTAATTAGAGATGAGTAGTGGCTTTTTCTTAATTAGCAGGG
TANTAATTAATTACTTAATTAGGGTTGGACCCCTGTAGTTTTCTTGTTTATANCTACGTGTATAATTTAGCTCNGGTTTT
GAACTTTTTAATTAGTTTCATAATCTTTTTTTTTNCCTATCTCTCACTTCACCCTGTTTGTTGTTTACTCAGCAAAGAAT
ATGGTGTCTTTGTATAAAGTGATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4605.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis