Browse Element(s) Details


Os.9166.1.S1_a_at

Description gb:AY151044.1
DB_XREF= gi:24850306
TID=Os.9166.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9166 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) transcription factor MYBS3 mRNA, complete cds.
PROD=transcription factor MYBS3
FL= gb:AK101062.1 gb:AY151044.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4120011/11ZmMybst1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41150Os.19725.1.S1_x_at10/1110+21775681..21779426aminotransferase, classes I and II family protein, expressed
LOC_Os10g41150Os.14940.1.S1_at9/1110+21775681..21779426aminotransferase, classes I and II family protein, expressed
LOC_Os10g41150Os.25227.1.S1_x_at1/1110+21775681..21779426aminotransferase, classes I and II family protein, expressed
LOC_Os10g41160Os.16083.1.S1_at11/1110+21782610..21784063expressed protein
LOC_Os10g41170Os.57082.1.S1_at11/1110+21787466..21790532oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os10g41180Os.46183.1.S1_at10/1110+21792111..21794280expressed protein
LOC_Os10g41190Os.26817.1.S1_at11/1110+21794588..21798099Hexose carrier protein HEX6, putative, expressed
LOC_Os10g41200Os.9166.1.S1_a_at11/1110+21798750..21801974ZmMybst1, putative, expressed
LOC_Os10g41210Os.9166.4.S1_x_at10/1110+21803800..21807068NA
LOC_Os10g41220Os.46463.1.S1_at11/1110+21807268..21812044U-box domain containing protein, expressed
LOC_Os10g41230Os.4605.1.S1_at11/1110+21822961..21824470HD-ZIP protein N terminus containing protein, expressed
LOC_Os10g41230Os.23043.1.A1_x_at2/1110+21822961..21824470HD-ZIP protein N terminus containing protein, expressed
LOC_Os10g41230Os.49759.1.S1_x_at1/1110+21822961..21824470HD-ZIP protein N terminus containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9166.1.S1_a_at--520--8811Chr10:21799191..21799215 (25 bp)
TGTTCCAGTTCATTCAAAGAGCCCA
LOC_Os10g41200
Os.9166.1.S1_a_at--1135--5871Chr10:21799173..21799197 (25 bp)
GAGCCCAATCAACGTTGATGAGCTT
LOC_Os10g41200
Os.9166.1.S1_a_at--407--7231Chr10:21799140..21799164 (25 bp)
GTCGAAGCTCAGCATAGGAGAGTCC
LOC_Os10g41200
Os.9166.1.S1_a_at--821--2051Chr10:21799097..21799121 (25 bp)
ACTTCTCTTTCATTAAATCTGGTAG
LOC_Os10g41200
Os.9166.1.S1_a_at--1088--5591Chr10:21799060..21799084 (25 bp)
GACAATCAGCTTTCCATGCAAATCC
LOC_Os10g41200
Os.9166.1.S1_a_at--93--591Chr10:21799039..21799063 (25 bp)
ATCCACCAACAAGGGCACAGGCATG
LOC_Os10g41200
Os.9166.1.S1_a_at--825--2551Chr10:21798998..21799022 (25 bp)
AACTGCATTTAGATGAATCCCAGGC
LOC_Os10g41200
Os.9166.1.S1_a_at--816--3271Chr10:21798974..21798998 (25 bp)
CAAAATAAGCTTTGCCTCCTTGTTT
LOC_Os10g41200
Os.9166.1.S1_a_at--377--9791Chr10:21798935..21798959 (25 bp)
TAAGATTAACCGTTCTCCGTAGTCT
LOC_Os10g41200
Os.9166.1.S1_a_at--602--9291Chr10:21798920..21798944 (25 bp)
TCCGTAGTCTGTATCATGTGCTGTA
LOC_Os10g41200
Os.9166.1.S1_a_at--89--6911Chr10:21798876..21798900 (25 bp)
GTATCTGTTGTTTGTCTGGCACACA
LOC_Os10g41200
Target Sequence 
TGTTCCAGTTCATTCAAAGAGCCCAATCAACGTTGATGAGCTTGTTGGCATGTCGAAGCTCAGCATAGGAGAGTCCAATC
AAGAGACAGNGTCTACTTCTCTTTCATTAAATCTGGTAGGAGGTCAAAATAGACAATCAGCTTTCCATGCAAATCCACCA
ACAAGGGCACAGGCATGATCTNNTTNTGCACACAACTGCATTTAGATGAATCCCAGGCAAAATAAGCTTTGCCTCCTTGT
TTTTTTGTTTTTATTTTAAGATTAACCGTTCTCCGTAGTCTGTATCATGTGCTGTAAGTTATGCTATGTATGAATGTATC
TGTTGTTTGTCTGGCACACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9166.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis