Browse Element(s) Details


Os.16083.1.S1_at

Description gb:NM_197744.1
DB_XREF= gi:37536847
TID=Os.16083.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.16083 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0042H09.3), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4116011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41130OsAffx.18596.1.S1_at11/1110+21769936..21770869AP2 domain containing protein, expressed
LOC_Os10g41130OsAffx.18596.1.S1_x_at11/1110+21769936..21770869AP2 domain containing protein, expressed
LOC_Os10g41150Os.19725.1.S1_x_at10/1110+21775681..21779426aminotransferase, classes I and II family protein, expressed
LOC_Os10g41150Os.14940.1.S1_at9/1110+21775681..21779426aminotransferase, classes I and II family protein, expressed
LOC_Os10g41150Os.25227.1.S1_x_at1/1110+21775681..21779426aminotransferase, classes I and II family protein, expressed
LOC_Os10g41160Os.16083.1.S1_at11/1110+21782610..21784063expressed protein
LOC_Os10g41170Os.57082.1.S1_at11/1110+21787466..21790532oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os10g41180Os.46183.1.S1_at10/1110+21792111..21794280expressed protein
LOC_Os10g41190Os.26817.1.S1_at11/1110+21794588..21798099Hexose carrier protein HEX6, putative, expressed
LOC_Os10g41200Os.9166.1.S1_a_at11/1110+21798750..21801974ZmMybst1, putative, expressed
LOC_Os10g41210Os.9166.4.S1_x_at10/1110+21803800..21807068NA
LOC_Os10g41220Os.46463.1.S1_at11/1110+21807268..21812044U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16083.1.S1_at--494--4691Chr10:21783230..21783254 (25 bp)
GCGGCTACCCGATCAGACAGGACGA
LOC_Os10g41160
Os.16083.1.S1_at--693--9651Chr10:21783218..21783242 (25 bp)
TCAGACAGGACGACATCATCAACTT
LOC_Os10g41160
Os.16083.1.S1_at--1000--10491Chr10:21783099..21783216 (25 bp)
TTCAACTCGTTGTACGGGCCGTGCG
LOC_Os10g41160
Os.16083.1.S1_at--340--1511Chr10:21782972..21782996 (25 bp)
AGCAGACGGCGAAGTACATGATCAA
LOC_Os10g41160
Os.16083.1.S1_at--585--8011Chr10:21782945..21782969 (25 bp)
GGAGGCACCTCTGGGCCAGGATCTA
LOC_Os10g41160
Os.16083.1.S1_at--437--3451Chr10:21782929..21782953 (25 bp)
CAGGATCTACGTGCCAAGCTCCAAG
LOC_Os10g41160
Os.16083.1.S1_at--147--9011Chr10:21782855..21782879 (25 bp)
TGAATGCTATACACTTACGCTGATA
LOC_Os10g41160
Os.16083.1.S1_at--1139--4751Chr10:21782818..21782842 (25 bp)
GCTGCAGCCAGAGCTATATTATCAT
LOC_Os10g41160
Os.16083.1.S1_at--549--7471Chr10:21782703..21782727 (25 bp)
GTGTGTTAGGCATGCATGTCCAAGC
LOC_Os10g41160
Os.16083.1.S1_at--79--771Chr10:21782688..21782712 (25 bp)
ATGTCCAAGCATACTACCCTATCTA
LOC_Os10g41160
Os.16083.1.S1_at--959--9951Chr10:21782674..21782698 (25 bp)
TACCCTATCTAGAGCTTTGGACAGA
LOC_Os10g41160
Target Sequence 
GCGGCTACCCGATCAGACAGGACGACATCATCAACTTCTTCAACTCGTTGTACGGGCCGTGCGTGGAGTCGGTGATNGGT
GGAGAAGNCGNCGNGCGGGNCANCTGCCGGTGTACGGACGGNTGNTGCTCCGGTGCCCGTCGATGATCCCGGTGGTGCTC
GACGGACAGCAGACGGCGAAGTACATGATCAAGGGGAGGCACCTCTGGGCCAGGATCTACGTGCCAAGCTCCAAGCCCNA
CTGAACTGAACTGAACTGAACTGAATACTACTACTACATATGCATGAATGCTATACACTTACGCTGATATAGTATCATCA
AGCTGCAGCCAGAGCTATATTATCATATATAATCACATGAATTAATTAAGTATGTGTTTAGCTATACTAGCTCAGAGAGA
GACNAGTGTTGATCCANTGTATGATCTGTTGATGTTTGTGTGTTAGGCATGCATGTCCAAGCATACTACCCTATCTAGAG
CTTTGGACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis