Browse Element(s) Details


Os.9166.4.S1_x_at

Description gb:NM_197749.1
DB_XREF= gi:37536857
TID=Os.9166.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9166 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0089A17.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0089A17.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4121010/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41150Os.19725.1.S1_x_at10/1110+21775681..21779426aminotransferase, classes I and II family protein, expressed
LOC_Os10g41150Os.14940.1.S1_at9/1110+21775681..21779426aminotransferase, classes I and II family protein, expressed
LOC_Os10g41150Os.25227.1.S1_x_at1/1110+21775681..21779426aminotransferase, classes I and II family protein, expressed
LOC_Os10g41160Os.16083.1.S1_at11/1110+21782610..21784063expressed protein
LOC_Os10g41170Os.57082.1.S1_at11/1110+21787466..21790532oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os10g41180Os.46183.1.S1_at10/1110+21792111..21794280expressed protein
LOC_Os10g41190Os.26817.1.S1_at11/1110+21794588..21798099Hexose carrier protein HEX6, putative, expressed
LOC_Os10g41200Os.9166.1.S1_a_at11/1110+21798750..21801974ZmMybst1, putative, expressed
LOC_Os10g41210Os.9166.4.S1_x_at10/1110+21803800..21807068NA
LOC_Os10g41220Os.46463.1.S1_at11/1110+21807268..21812044U-box domain containing protein, expressed
LOC_Os10g41230Os.4605.1.S1_at11/1110+21822961..21824470HD-ZIP protein N terminus containing protein, expressed
LOC_Os10g41230Os.23043.1.A1_x_at2/1110+21822961..21824470HD-ZIP protein N terminus containing protein, expressed
LOC_Os10g41230Os.49759.1.S1_x_at1/1110+21822961..21824470HD-ZIP protein N terminus containing protein, expressed
LOC_Os10g41240Os.3145.1.S1_at11/1110+21831481..21835370Dual specificity phosphatase, catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9166.4.S1_x_at--810--3231Chr10:21806876..21806988 (25 bp)
GAATCCGACCGGAGGCAGGGTTATG
LOC_Os10g41210
Os.9166.4.S1_x_at--904--911NONE
AGGCAGGGTTATGGATGCATCAAGC
NONE
Os.9166.4.S1_x_at--391--831Chr10:21806476..21806498 (23 bp)
ATGGATGCATCAAGCGGTATTTCTG
LOC_Os10g41210
Os.9166.4.S1_x_at--22--7871Chr10:21806461..21806485 (25 bp)
GGTATTTCTGATTTGGGCCTCTGGA
LOC_Os10g41210
Os.9166.4.S1_x_at--8--10851Chr10:21806449..21806473 (25 bp)
TTGGGCCTCTGGAAGATGGATTTGA
LOC_Os10g41210
Os.9166.4.S1_x_at--263--831Chr10:21806434..21806458 (25 bp)
ATGGATTTGAGTGATGATGTGTACC
LOC_Os10g41210
Os.9166.4.S1_x_at--137--6271Chr10:21806419..21806443 (25 bp)
GATGTGTACCAATTGCTTTCTGAAG
LOC_Os10g41210
Os.9166.4.S1_x_at--445--3851Chr10:21805302..21805322 (21 bp)
CTGAAGTGAAGCATATGAATCTGAT
LOC_Os10g41210
Os.9166.4.S1_x_at--651--5251Chr10:21805286..21805310 (25 bp)
GAATCTGATGATGGAAACTGTTGCA
LOC_Os10g41210
Os.9166.4.S1_x_at--495--2391Chr10:21805272..21805296 (25 bp)
AAACTGTTGCAACGGCACATTCGGA
LOC_Os10g41210
Os.9166.4.S1_x_at--314--5111Chr10:21805258..21805282 (25 bp)
GCACATTCGGAATATGCCAATATGG
LOC_Os10g41210
Target Sequence 
GAATCCGACCGGAGGCAGGGTTATGGATGCATCAAGCGGTATTTCTGATTTGGGCCTCTGGAAGATGGATTTGAGTGATG
ATGTGTACCAATTGCTTTCTGAAGTGAAGCATATGAATCTGATGATGGAAACTGTTGCAACGGCACATTCGGAATATGCC
AATATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9166.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis