Browse Element(s) Details


Os.19725.1.S1_x_at

Description gb:AU094796
DB_XREF= gi:8857478
DB_XREF=AU094796
CLONE=E31688
TID=Os.19725.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.19725 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 8-amino-7-oxononanoate synthase (OSJNBb0089A17.1), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4115010/11aminotransferase, classes I and II family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41110Os.27665.1.S1_at6/1110+21750525..21753511Autophagocytosis associated protein, N-terminal domain containing protein
LOC_Os10g41120Os.11299.1.S1_x_at10/1110+21754135..21757445expressed protein
LOC_Os10g41130OsAffx.18596.1.S1_at11/1110+21769936..21770869AP2 domain containing protein, expressed
LOC_Os10g41130OsAffx.18596.1.S1_x_at11/1110+21769936..21770869AP2 domain containing protein, expressed
LOC_Os10g41150Os.19725.1.S1_x_at10/1110+21775681..21779426aminotransferase, classes I and II family protein, expressed
LOC_Os10g41150Os.14940.1.S1_at9/1110+21775681..21779426aminotransferase, classes I and II family protein, expressed
LOC_Os10g41150Os.25227.1.S1_x_at1/1110+21775681..21779426aminotransferase, classes I and II family protein, expressed
LOC_Os10g41160Os.16083.1.S1_at11/1110+21782610..21784063expressed protein
LOC_Os10g41170Os.57082.1.S1_at11/1110+21787466..21790532oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os10g41180Os.46183.1.S1_at10/1110+21792111..21794280expressed protein
LOC_Os10g41190Os.26817.1.S1_at11/1110+21794588..21798099Hexose carrier protein HEX6, putative, expressed
LOC_Os10g41200Os.9166.1.S1_a_at11/1110+21798750..21801974ZmMybst1, putative, expressed
LOC_Os10g41210Os.9166.4.S1_x_at10/1110+21803800..21807068NA

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0030148biological_processsphingolipid biosynthesis
GO:0046512biological_processsphingosine biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0016020cellular_componentmembrane
GO:0004758molecular_functionserine C-palmitoyltransferase activity
GO:0008483molecular_functiontransaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19725.1.S1_x_at--690--8611Chr10:21777542..21777566 (25 bp)
TGGTGCACCTGAGCTGTTTGAATGT
LOC_Os10g41150
Os.19725.1.S1_x_at--87--6611Chr10:21777588..21777612 (25 bp)
GTTGGCACCTTAAGCAAGGCTGCTG
LOC_Os10g41150
Os.19725.1.S1_x_at--919--6791NONE
GTTTTATAGCATGCAGTACCCGATG
NONE
Os.19725.1.S1_x_at--265--8291Chr10:21778178..21778202 (25 bp)
GGCTGATTCAATCGCGAGGTCGTTC
LOC_Os10g41150
Os.19725.1.S1_x_at--942--10331Chr10:21778221..21778245 (25 bp)
TTTACCAGTGCCAGTAGTTGCTTCT
LOC_Os10g41150
Os.19725.1.S1_x_at--425--8571Chr10:21778735..21778759 (25 bp)
TGGATTTCATGTCACGCCAATCCGA
LOC_Os10g41150
Os.19725.1.S1_x_at--59--1191Chr10:21778768..21778792 (25 bp)
AGTACCGCCCAACTCATGCAGGTTG
LOC_Os10g41150
Os.19725.1.S1_x_at--477--351Chr10:21779113..21779137 (25 bp)
ATAACTCTCAGTGCTTCTCATTCTT
LOC_Os10g41150
Os.19725.1.S1_x_at--52--7551Chr10:21779175..21779199 (25 bp)
GTGGCTCCCTCACAAACATGATATT
LOC_Os10g41150
Os.19725.1.S1_x_at--518--6571Chr10:21779235..21779259 (25 bp)
GATTCATCCGAGTGTTCAGCTCATC
LOC_Os10g41150
Os.19725.1.S1_x_at--397--6791Chr10:21779321..21779345 (25 bp)
GTTAGTGCTGGTTGACGCGATTAAT
LOC_Os10g41150
Target Sequence 
TGGTGCACCTGAGCTGTTTGAATGTGAGAATGAGATTGACATAAGTGTTGGCACCTTAAGCAAGGCTGCTGGCTGCCAGG
GTGGTTTTATAGCATGCAGTACCCGATGGAAGAGGCTGATTCAATCGCGAGGTCGTTCCTTCATATTTTCAACTGCTTTA
CCAGTGCCAGTAGTTGCTTCTGTGTATGTTGGAAGTGAAAAAGCAGCACTTAGAGCTGGAAGGGATATGCTAAGATCTGG
ATTTCATGTCACGCCAATCCGACCACCCACAGTACCGCCCAACTCATGCAGGTTGCGNATAACTCTCAGTGCTTCTCATT
CTTCGGATGNCATCAAAAGGCTGGTGGATGCNCTGNCGCCGTGGCTCCCTCACAAACATGATATTCAGATATATGCTGTG
GCATCAAAGCTNTAAACAATGATTCATCCGAGTGTTCAGCTCATCAAGCTTCAAGAAGTANCATTAGCTGAGATCCCNCC
GGATGATATGGGAGAAAAGGGGATAAGTTAGTGCTGGTTGACGCGATTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19725.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis