Browse Element(s) Details


Os.27665.1.S1_at

Description gb:AK067737.1
DB_XREF= gi:32977755
TID=Os.27665.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27665 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1015E06.2 (B1015E06.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013120F11, full insert sequence.
FL= gb:AK067737.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1029011/11Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os10g411106/11Autophagocytosis associated protein, N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10250Os.9487.1.S1_a_at11/111+5386541..5391214hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g10260OsAffx.22146.1.S1_x_at11/111+5398203..5398817expressed protein
LOC_Os01g10270Os.29966.1.S1_at2/111+5400104..5401369hypothetical protein
LOC_Os01g10280Os.14917.2.S1_x_at11/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.1.S1_x_at11/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.2.S1_at10/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.1.S1_at10/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10290Os.27665.1.S1_at11/111+5410397..5413668Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os01g10300OsAffx.23184.1.S1_at11/111+5413986..5415547expressed protein
LOC_Os01g10310OsAffx.1977.1.S1_x_at10/111+5420861..5421373hypothetical protein
LOC_Os01g10320Os.26565.3.S1_at11/111+5423343..5427416class III HD-Zip protein 6, putative, expressed
LOC_Os01g10340Os.6428.1.S1_at10/111+5432245..5439448expressed protein
LOC_Os01g10340OsAffx.12165.1.S1_at1/111+5432245..5439448expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006914biological_processautophagy
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27665.1.S1_at--878--3332Chr10:21751735..21751759 (25 bp)
CACGTGTCTGGCTTACCGGATATGA
LOC_Os10g41110
Os.27665.1.S1_at--662--8952Chr10:21751056..21751080 (25 bp)
TGACTATTGAAGACCATCCTCACTT
LOC_Os10g41110
Os.27665.1.S1_at--1160--552Chr10:21751041..21751065 (25 bp)
ATCCTCACTTGTCAGCAGGCAAGCA
LOC_Os10g41110
Os.27665.1.S1_at--445--8232Chr10:21751024..21751048 (25 bp)
GGCAAGCATGCTTCAGTGCATCCAT
LOC_Os10g41110
Os.27665.1.S1_at--437--2811Chr01:5410881..5410905 (25 bp)
AAGTTTATGGCCTCAGTCATACCCA
LOC_Os01g10290
Os.27665.1.S1_at--619--4451Chr01:5410872..5410896 (25 bp)
GCCTCAGTCATACCCACTATTGAAT
LOC_Os01g10290
Os.27665.1.S1_at--300--2192Chr10:21750764..21750788 (25 bp)
ACACTATGGACTTCGATCTGGGCAG
LOC_Os10g41110
Os.27665.1.S1_at--544--2792Chr10:21750543..21750567 (25 bp)
AAGATCCTGTAGAAGGTGTACCAAG
LOC_Os10g41110
Os.27665.1.S1_at--478--911Chr01:5410594..5410618 (25 bp)
AGGCTTATCATGGTGCCCCAAATAA
LOC_Os01g10290
Os.27665.1.S1_at--240--10512Chr10:21750385..21750407 (23 bp)
TTCACTTGAATTCGTTTGCCTTCCA
NONE
Os.27665.1.S1_at--195--5272Chr10:21750360..21750379 (20 bp)
GAATCCATCTGTTCTTAGATACACG
NONE
Target Sequence 
CACGTGTCTGGCTTACCGGATATGATGAGTCAAGAATGCCANTAAAGCCTGAACTTGTGTTTGAAGATATCAGCCAAGAN
CATGCNCGGAAGACGGTGACTATTGAAGACCATCCTCACTTGTCAGCAGGCAAGCATGCTTCAGTGCATCCATGCAAACA
NGCTGCTGTGATGAAAAAGATCATTGATGTTNTAATGTCTCNAGGAGTTGAACCAGAAGTTGACAAGTANCTTTTCATAT
TTTTGAAGTTTATGGCCTCAGTCATACCCACTATTGAATATGACTACACTATGGACTTCGATCTGGGCAGNACAAGCAGA
TGATTTGTTAATTGAAGGAAAGNGAAAGATCCTGTAGAAGGTGTACCAAGGCTTATCATGGTGCCCCAAATAATCATTGC
TTGNTGGAAAGANTTGTATATGCAATANGTGCGTGCATGTNTGCTCATTCGTTTGGAAAGTAACTGNAAACNNTGCAGAA
ACATCAGNNCNNNTNNNNCNNNNNNNNGTAACANTACATANNCGTTTCACTTGAATTCGTTTGCCTTCCAGNTTGAATCC
ATCTGTTCTTAGATACACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27665.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis