Browse Element(s) Details


OsAffx.1977.1.S1_x_at

Description gb:NM_188278.1
DB_XREF= gi:34903639
GEN=B1015E06.3
TID=OsAffx.1977.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1015E06.3 (B1015E06.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1031010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10260OsAffx.22146.1.S1_x_at11/111+5398203..5398817expressed protein
LOC_Os01g10270Os.29966.1.S1_at2/111+5400104..5401369hypothetical protein
LOC_Os01g10280Os.14917.2.S1_x_at11/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.1.S1_x_at11/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.2.S1_at10/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.1.S1_at10/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10290Os.27665.1.S1_at11/111+5410397..5413668Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os01g10300OsAffx.23184.1.S1_at11/111+5413986..5415547expressed protein
LOC_Os01g10310OsAffx.1977.1.S1_x_at10/111+5420861..5421373hypothetical protein
LOC_Os01g10320Os.26565.3.S1_at11/111+5423343..5427416class III HD-Zip protein 6, putative, expressed
LOC_Os01g10340Os.6428.1.S1_at10/111+5432245..5439448expressed protein
LOC_Os01g10340OsAffx.12165.1.S1_at1/111+5432245..5439448expressed protein
LOC_Os01g10350Os.35261.1.S1_at11/111+5439668..5443048MPPN domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1977.1.S1_x_at--472--5711Chr01:5420840..5420864 (25 bp)
GACTCACAAAGCTCAAACAAGATGG
NONE
OsAffx.1977.1.S1_x_at--182--431Chr01:5420873..5420897 (25 bp)
ATCATCATCAAGAGTAGCGGCAGCG
LOC_Os01g10310
OsAffx.1977.1.S1_x_at--335--1632Chr05:21102687..21102712 (23 bp)
AGCGGCGACGCACGCCATGACGACG
NONE
OsAffx.1977.1.S1_x_at--145--4631Chr01:5420931..5420955 (25 bp)
GCGAGGTGGAGACCGTGCGGTGCGC
LOC_Os01g10310
OsAffx.1977.1.S1_x_at--112--8392Chr10:14650315..14650665 (25 bp)
GGCGACTGGCTGTGCGGGCTGTGCT
NONE
OsAffx.1977.1.S1_x_at--929--1831Chr01:5421117..5421141 (25 bp)
ACGCGGCGGAGTGCAGGGACTTCAA
LOC_Os01g10310
OsAffx.1977.1.S1_x_at--539--5691Chr01:5421134..5421158 (25 bp)
GACTTCAACGCGACGACGAGGCTGA
LOC_Os01g10310
OsAffx.1977.1.S1_x_at--680--6211Chr01:5421151..5421175 (25 bp)
GAGGCTGAACCCGACGCTGTCGCTG
LOC_Os01g10310
OsAffx.1977.1.S1_x_at--244--4091Chr01:5421162..5421186 (25 bp)
CGACGCTGTCGCTGGCGGGCTCCAT
LOC_Os01g10310
OsAffx.1977.1.S1_x_at--737--531Chr01:5421194..5421218 (25 bp)
ATCGCGCGGCGGAGCTTCGACAAGA
LOC_Os01g10310
OsAffx.1977.1.S1_x_at--1076--4891Chr01:5421207..5421231 (25 bp)
GCTTCGACAAGAGGACGTCGGCGTC
LOC_Os01g10310
Target Sequence 
GACTCACAAAGCTCAAACAAGATGGAGAAGCTCATCATCATCAAGAGTAGCGGCAGCGGCAGCGGCGACGCACGCCATGA
CGACGGCGGCGGCGAGGTGGAGACCGTGCGGTGCGCGTGCTGCGGCGTGGCGGAGGAGTGCACGGCGGCGTACATCGGCG
GCGTGCGCGCGGCGTTCTGCGGCGACTGGCTGTGCGGGCTGTGCTCGGAGGCCGTGAAGGAGACGGCGCGGCGCGACCCG
GCGCCGGGCGGCGGCGTGGCGGCGGCGCTGGCGTCGCACGCGGCGGAGTGCAGGGACTTCAACGCGACGACGAGGCTGAA
CCCGACGCTGTCGCTGGCGGGCTCCATGCGCCGCATCGCGCGGCGGAGCTTCGACAAGAGGACGTCGGCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1977.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis