Browse Element(s) Details


Os.14917.1.S1_at

Description gb:AK068172.1
DB_XREF= gi:32978190
TID=Os.14917.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14917 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative phosphoribosylaminoimidazole carboxylase (EC 4.1.1.21) (B1046G12.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129D15, full insert sequence.
FL= gb:AK068172.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1028010/11Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10230NANA1+5381041..5381619hypothetical protein
LOC_Os01g10240OsAffx.10993.1.S1_at11/111+5383797..5384930organic cation transporter, putative, expressed
LOC_Os01g10240OsAffx.10993.1.S1_x_at11/111+5383797..5384930organic cation transporter, putative, expressed
LOC_Os01g10240OsAffx.10993.2.S1_x_at1/111+5383797..5384930organic cation transporter, putative, expressed
LOC_Os01g10250Os.9487.1.S1_a_at11/111+5386541..5391214hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g10260OsAffx.22146.1.S1_x_at11/111+5398203..5398817expressed protein
LOC_Os01g10270Os.29966.1.S1_at2/111+5400104..5401369hypothetical protein
LOC_Os01g10280Os.14917.2.S1_x_at11/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.1.S1_x_at11/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.2.S1_at10/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.1.S1_at10/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10290Os.27665.1.S1_at11/111+5410397..5413668Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os01g10300OsAffx.23184.1.S1_at11/111+5413986..5415547expressed protein
LOC_Os01g10310OsAffx.1977.1.S1_x_at10/111+5420861..5421373hypothetical protein
LOC_Os01g10320Os.26565.3.S1_at11/111+5423343..5427416class III HD-Zip protein 6, putative, expressed
LOC_Os01g10340Os.6428.1.S1_at10/111+5432245..5439448expressed protein
LOC_Os01g10340OsAffx.12165.1.S1_at1/111+5432245..5439448expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006189biological_process'de novo' IMP biosynthesis
GO:0009320cellular_componentphosphoribosylaminoimidazole carboxylase complex
GO:0004638molecular_functionphosphoribosylaminoimidazole carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14917.1.S1_at--419--9111Chr01:5409191..5409215 (25 bp)
TGCTGCCCGTTTAATTGACATTCTT
LOC_Os01g10280
Os.14917.1.S1_at--24--6671Chr01:5409227..5409251 (25 bp)
GTTGACATAAGCAGATATGGTCCAT
LOC_Os01g10280
Os.14917.1.S1_at--1088--3431Chr01:5409238..5409365 (25 bp)
CAGATATGGTCCATGTGGAGGCCTG
LOC_Os01g10280
Os.14917.1.S1_at--179--6232Chr01:5416938..5416962 (25 bp)
GAGGCCTGGAGAGGGCGTGCCGACT
NONE
Os.14917.1.S1_at--152--2791Chr01:5409393..5409417 (25 bp)
AAGATGTCGACGAAACACGGCGCAT
LOC_Os01g10280
Os.14917.1.S1_at--173--9651Chr01:5409425..5409449 (25 bp)
TCAGTAGCAGAAAGCTTTGCTTGTA
LOC_Os01g10280
Os.14917.1.S1_at--741--2351Chr01:5409435..5409459 (25 bp)
AAAGCTTTGCTTGTATAACTGTAAC
LOC_Os01g10280
Os.14917.1.S1_at--933--591Chr01:5409463..5409487 (25 bp)
ATGCCTGCCTGAAATGTTCATGTGG
LOC_Os01g10280
Os.14917.1.S1_at--733--4471Chr01:5409469..5409493 (25 bp)
GCCTGAAATGTTCATGTGGATCTTA
LOC_Os01g10280
Os.14917.1.S1_at--798--6731Chr01:5409478..5409502 (25 bp)
GTTCATGTGGATCTTATGATGATAT
LOC_Os01g10280
Os.14917.1.S1_at--584--2331Chr01:5409547..5409571 (25 bp)
AAAGAATTGAGTCCCTAAAGTATCA
NONE
Target Sequence 
TGCTGCCCGTTTAATTGACATTCTTTTNGATCCAGTGTTGACATAAGCAGATATGGTCCATGTGGAGGCCTGGAGAGGGC
GTGCCGACTNACGAAGTGAAAGATGTCGACGAAACACGGCGCATGAGCATNTCAGTAGCAGAAAGCTTTGCTTGTATAAC
TGTAACAANCATGCCTGCCTGAAATGTTCATGTGGATCTTATGATGATATTTCAGGGAAAAAAANTCAACCAATTTTAAN
GAGTTNTGAAAAAAAAAGAATTGAGTCCCTAAAGTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14917.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis