Browse Element(s) Details


Os.9487.1.S1_a_at

Description gb:AK070748.1
DB_XREF= gi:32980771
TID=Os.9487.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9487 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) lysophospholipase - like (B1046G12.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023068O10, full insert sequence.
FL= gb:AK070748.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1025011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10200OsAffx.23183.1.S1_at11/111+5366204..5366693hypothetical protein
LOC_Os01g10210Os.20203.1.S1_s_at11/111+5370432..5371594expressed protein
LOC_Os01g10210Os.20203.1.S1_at11/111+5370432..5371594expressed protein
LOC_Os01g10219NANA1+5373117..5373358NA
LOC_Os01g10230NANA1+5381041..5381619hypothetical protein
LOC_Os01g10240OsAffx.10993.1.S1_at11/111+5383797..5384930organic cation transporter, putative, expressed
LOC_Os01g10240OsAffx.10993.1.S1_x_at11/111+5383797..5384930organic cation transporter, putative, expressed
LOC_Os01g10240OsAffx.10993.2.S1_x_at1/111+5383797..5384930organic cation transporter, putative, expressed
LOC_Os01g10250Os.9487.1.S1_a_at11/111+5386541..5391214hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g10260OsAffx.22146.1.S1_x_at11/111+5398203..5398817expressed protein
LOC_Os01g10270Os.29966.1.S1_at2/111+5400104..5401369hypothetical protein
LOC_Os01g10280Os.14917.2.S1_x_at11/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.1.S1_x_at11/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.2.S1_at10/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.1.S1_at10/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10290Os.27665.1.S1_at11/111+5410397..5413668Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os01g10300OsAffx.23184.1.S1_at11/111+5413986..5415547expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9487.1.S1_a_at--653--9811Chr01:5387212..5387236 (25 bp)
TAACAAGAGAGGCATCCCGGTGTCC
LOC_Os01g10250
Os.9487.1.S1_a_at--24--10331Chr01:5387073..5387097 (25 bp)
TTGAAGAAGGTCACCGTCCCATTCA
LOC_Os01g10250
Os.9487.1.S1_a_at--1160--831Chr01:5387039..5387063 (25 bp)
ATGGAACCGCAGACCGGGTGACCGA
LOC_Os01g10250
Os.9487.1.S1_a_at--775--8291Chr01:5387008..5387032 (25 bp)
GGCTTCACAGGACCTCTACAACGAG
LOC_Os01g10250
Os.9487.1.S1_a_at--393--4451Chr01:5386983..5387007 (25 bp)
GCCTCATCGAGGCACAAGGATCTGA
LOC_Os01g10250
Os.9487.1.S1_a_at--988--6191Chr01:5386960..5386984 (25 bp)
GAGGCTGTACGATGGGTTCTTGCAC
LOC_Os01g10250
Os.9487.1.S1_a_at--1021--6731Chr01:5386945..5386969 (25 bp)
GTTCTTGCACGATCTGCTCTTTGAG
LOC_Os01g10250
Os.9487.1.S1_a_at--1074--3751Chr01:5386929..5386953 (25 bp)
CTCTTTGAGCCTGAGCGTGATGAGA
LOC_Os01g10250
Os.9487.1.S1_a_at--580--631Chr01:5386872..5386896 (25 bp)
ATGCTAGCTCTGCAAACCGTGTGAA
LOC_Os01g10250
Os.9487.1.S1_a_at--927--871Chr01:5386791..5386815 (25 bp)
ATGGCCGTGTATGTCATTGATCTCA
LOC_Os01g10250
Os.9487.1.S1_a_at--310--51Chr01:5386710..5386734 (25 bp)
ATTGTTTCATGTAGGACTGGGTCGA
LOC_Os01g10250
Target Sequence 
TAACAAGAGAGGCATCCCGGTGTCCCGCGANCCGGCTNGCCCTGCTANGCGAAGTACTCCGATCCGCTGGNTTANACCGG
GCCGNTNAGAGTTCGGACCGGCCATGAAATCCTACGCATCTCCTCCTACCTGCTGCACAACTTGAAGAAGGTCACCGTCC
CATTCATGGTCCTCCATGGAACCGCAGACCGGGTGACCGACCCCCTGGCTTCACAGGACCTCTACAACGAGGCCTCATCG
AGGCACAAGGATCTGAGGCTGTACGATGGGTTCTTGCACGATCTGCTCTTTGAGCCTGAGCGTGATGAGATCGCCACAGA
CATCATCGACTGGATGGAGCGAATGCTAGCTCTGCAAACCGTGTGAAGGAGAGCAGTTTGCCTGAAAAAGGAGAAAAGAA
AAATTGTATGATAAGTTAGGAAAATGGCCGTGTATGTCATTGATCTCATTCTTGATGGAATTATCTGAAAGTGATCTACA
AGCTTCAAGTGGTGATTTTGGTTGATTGTTTCATGTAGGACTGGGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9487.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis