Browse Element(s) Details


OsAffx.23183.1.S1_at

Description tigr:9629.m00970
TID=OsAffx.23183.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1020011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10180Os.30696.1.S1_at10/111+5349307..5350409expressed protein
LOC_Os01g10190OsAffx.23182.1.S1_at11/111+5351403..5354507hypothetical protein
LOC_Os01g10200OsAffx.23183.1.S1_at11/111+5366204..5366693hypothetical protein
LOC_Os01g10210Os.20203.1.S1_s_at11/111+5370432..5371594expressed protein
LOC_Os01g10210Os.20203.1.S1_at11/111+5370432..5371594expressed protein
LOC_Os01g10219NANA1+5373117..5373358NA
LOC_Os01g10230NANA1+5381041..5381619hypothetical protein
LOC_Os01g10240OsAffx.10993.1.S1_at11/111+5383797..5384930organic cation transporter, putative, expressed
LOC_Os01g10240OsAffx.10993.1.S1_x_at11/111+5383797..5384930organic cation transporter, putative, expressed
LOC_Os01g10240OsAffx.10993.2.S1_x_at1/111+5383797..5384930organic cation transporter, putative, expressed
LOC_Os01g10250Os.9487.1.S1_a_at11/111+5386541..5391214hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23183.1.S1_at--1022--5051Chr01:5366268..5366514 (25 bp)
GCAGCGCAGGACCAACCAACGGTGT
LOC_Os01g10200
OsAffx.23183.1.S1_at--131--4131Chr01:5366495..5366518 (24 bp)
CGCAGGACCAACCAACGGTGTGGCA
LOC_Os01g10200
OsAffx.23183.1.S1_at--1035--951Chr01:5366497..5366521 (25 bp)
AGGACCAACCAACGGTGTGGCAGCA
LOC_Os01g10200
OsAffx.23183.1.S1_at--254--2651Chr01:5366503..5366527 (25 bp)
AACCAACGGTGTGGCAGCATCGCAG
LOC_Os01g10200
OsAffx.23183.1.S1_at--503--2571Chr01:5366507..5366531 (25 bp)
AACGGTGTGGCAGCATCGCAGCTAG
LOC_Os01g10200
OsAffx.23183.1.S1_at--127--7491Chr01:5366511..5366535 (25 bp)
GTGTGGCAGCATCGCAGCTAGCCAA
LOC_Os01g10200
OsAffx.23183.1.S1_at--228--8511Chr01:5366514..5366538 (25 bp)
TGGCAGCATCGCAGCTAGCCAAGCT
LOC_Os01g10200
OsAffx.23183.1.S1_at--322--1531Chr01:5366518..5366542 (25 bp)
AGCATCGCAGCTAGCCAAGCTCAGC
LOC_Os01g10200
OsAffx.23183.1.S1_at--455--1571Chr01:5366526..5366550 (25 bp)
AGCTAGCCAAGCTCAGCCGCGGGAA
LOC_Os01g10200
OsAffx.23183.1.S1_at--478--9991Chr01:5366529..5366553 (25 bp)
TAGCCAAGCTCAGCCGCGGGAAAGG
LOC_Os01g10200
OsAffx.23183.1.S1_at--394--9671Chr01:5366538..5366562 (25 bp)
TCAGCCGCGGGAAAGGAGCAGAGCA
LOC_Os01g10200
Target Sequence 
GCAGCGCAGGACCAACCAACGGTGTGGCAGCATCGCAGCTAGCCAAGCTCAGCCGCGGGAAAGGAGCAGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis