Browse Element(s) Details


Os.30696.1.S1_at

Description gb:AK108464.1
DB_XREF= gi:32993673
TID=Os.30696.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30696 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0419B01.19 (P0419B01.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-D11, full insert sequence.
FL= gb:AK108464.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1018010/11expressed protein
LOC_Os03g503901/11protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10150Os.2203.3.S1_x_at11/111+5325721..5332320protein kinase family protein, putative, expressed
LOC_Os01g10160OsAffx.23181.1.S1_x_at11/111+5333506..5334132hypothetical protein
LOC_Os01g10170Os.12008.3.S1_at11/111+5336246..5336531hypothetical protein
LOC_Os01g10180Os.30696.1.S1_at10/111+5349307..5350409expressed protein
LOC_Os01g10190OsAffx.23182.1.S1_at11/111+5351403..5354507hypothetical protein
LOC_Os01g10200OsAffx.23183.1.S1_at11/111+5366204..5366693hypothetical protein
LOC_Os01g10210Os.20203.1.S1_s_at11/111+5370432..5371594expressed protein
LOC_Os01g10210Os.20203.1.S1_at11/111+5370432..5371594expressed protein
LOC_Os01g10219NANA1+5373117..5373358NA

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30696.1.S1_at--969--3491Chr01:5349445..5349469 (25 bp)
CATGGGCGAGCGAGCGCGAATACTA
LOC_Os01g10180
Os.30696.1.S1_at--734--5871Chr01:5349434..5349458 (25 bp)
GAGCGCGAATACTAAAGCACGAGAA
LOC_Os01g10180
Os.30696.1.S1_at--530--10171Chr01:5349398..5349422 (25 bp)
TATATAAGGGACTATGTGGCGTCAA
LOC_Os01g10180
Os.30696.1.S1_at--931--8651Chr01:5349384..5349408 (25 bp)
TGTGGCGTCAAAATTGTTTCACTGA
LOC_Os01g10180
Os.30696.1.S1_at--834--3277Chr12:26332630..26332908 (25 bp)
CAAAATTGTTTCACTGACATGTGGG
NONE
Os.30696.1.S1_at--135--5671Chr01:5349361..5349385 (25 bp)
GACATGTGGGTTTCGAGTTTTTCTA
LOC_Os01g10180
Os.30696.1.S1_at--332--10291Chr01:5349351..5349375 (25 bp)
TTTCGAGTTTTTCTACCTGCATGGC
LOC_Os01g10180
Os.30696.1.S1_at--44--10331Chr01:5349342..5349366 (25 bp)
TTTCTACCTGCATGGCTGCGTGTAA
LOC_Os01g10180
Os.30696.1.S1_at--1106--8311Chr01:5349329..5349353 (25 bp)
GGCTGCGTGTAATTTTTCCTCGGTT
LOC_Os01g10180
Os.30696.1.S1_at--1135--9251Chr01:5349313..5349337 (25 bp)
TCCTCGGTTAATTAATTTCCTCGCT
LOC_Os01g10180
Os.30696.1.S1_at--155--6771Chr01:5349307..5349331 (25 bp)
GTTAATTAATTTCCTCGCTTGTGAT
NONE
Target Sequence 
CATGGGCGAGCGAGCGCGAATACTAAAGCACGAGAAGCTTATATATATATATAAGGGACTATGTGGCGTCAAAATTGTTT
CACTGACATGTGGGTTTCGAGTTTTTCTACCTGCATGGCTGCGTGTAATTTTTCCTCGGTTAATTAATTTCCTCGCTTGT
GAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30696.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis