Browse Element(s) Details


Os.2203.3.S1_x_at

Description gb:NM_188260.1
DB_XREF= gi:34903603
GEN=P0419B01.15
TID=Os.2203.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.2203 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) casein kinase-like protein (P0419B01.15), mRNA.
PROD=casein kinase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1015011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10140Os.2202.3.S1_x_at11/111+5304217..5321280RNA dependent RNA polymerase family protein, expressed
LOC_Os01g10140Os.2202.2.S1_x_at11/111+5304217..5321280RNA dependent RNA polymerase family protein, expressed
LOC_Os01g10150Os.2203.3.S1_x_at11/111+5325721..5332320protein kinase family protein, putative, expressed
LOC_Os01g10160OsAffx.23181.1.S1_x_at11/111+5333506..5334132hypothetical protein
LOC_Os01g10170Os.12008.3.S1_at11/111+5336246..5336531hypothetical protein
LOC_Os01g10180Os.30696.1.S1_at10/111+5349307..5350409expressed protein
LOC_Os01g10190OsAffx.23182.1.S1_at11/111+5351403..5354507hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2203.3.S1_x_at--1116--8551Chr01:5328198..5328222 (25 bp)
TGGATGCTGGCACTGGTTTTACCGC
LOC_Os01g10150
Os.2203.3.S1_x_at--268--10351Chr01:5328181..5328205 (25 bp)
TTTACCGCCCAAGTACATGAACTCT
LOC_Os01g10150
Os.2203.3.S1_x_at--550--2031Chr01:5327514..5327538 (25 bp)
ACTATATTACTTCTTTGGCTGGTTC
LOC_Os01g10150
Os.2203.3.S1_x_at--424--8191Chr01:5327482..5327506 (25 bp)
GGAAGCTCGGTGGTGATCATGTCAA
LOC_Os01g10150
Os.2203.3.S1_x_at--705--8171Chr01:5326547..5326571 (25 bp)
GGAACGCCATATGCACAGCAATCCT
LOC_Os01g10150
Os.2203.3.S1_x_at--298--7071Chr01:5326517..5326541 (25 bp)
GTAAGTGATTCATTTCCCTTCAAAT
LOC_Os01g10150
Os.2203.3.S1_x_at--1037--7671Chr01:5326469..5326493 (25 bp)
GGGTTCTATGTCACTGCCTTGGCCA
LOC_Os01g10150
Os.2203.3.S1_x_at--1101--791Chr01:5326431..5326455 (25 bp)
ATGGGCTGTGGTTATGTCCCGGAAC
LOC_Os01g10150
Os.2203.3.S1_x_at--1038--8171Chr01:5326411..5326435 (25 bp)
GGAACGCTGGTTTCACACATCAGGT
LOC_Os01g10150
Os.2203.3.S1_x_at--1126--2472Chr03:10154988..10155323 (25 bp)
AACAGCAGCCACATGTGACCAGGTG
NONE
Os.2203.3.S1_x_at--618--1971Chr01:5326114..5326138 (25 bp)
ACTGAGAACATCTGCTTTTCCTGGC
LOC_Os01g10150
Target Sequence 
TGGATGCTGGCACTGGTTTTACCGCCCAAGTACATGAACTCTCCCATTACTTTCTTCACAAGGAATGGATAATGGAGCAG
TGGGAGAGAAATTACTATATTACTTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAGGAACGCC
ATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAAATGGATAAACAAAAAGTGGAAGGAGGGGTTCTATG
TCACTGCCTTGGCCACAGCAGGAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGGTAGTAGAA
CTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGGGATAGTGGTTATCGCATAACTGCAACAGCAGCCACATG
TGACCAGGTGGCTTTGATCTTGAGCATACCTAGAAGAAAGCCTAACGATGAAACACAGGAGACACTGAGAACATCTGCTT
TTCCTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2203.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis