Browse Element(s) Details


Os.2202.2.S1_x_at

Description gb:AK119908.1
DB_XREF= gi:37989531
TID=Os.2202.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2202 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0419B01.14 (P0419B01.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-F11, full insert sequence.
FL= gb:AK119908.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1014011/11RNA dependent RNA polymerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10130Os.32212.2.S1_x_at11/111+5284938..5289760RNA-dependent RNA polymerase family protein, putative, expressed
LOC_Os01g10130Os.32212.1.A1_at11/111+5284938..5289760RNA-dependent RNA polymerase family protein, putative, expressed
LOC_Os01g10130Os.5217.1.S1_at1/111+5284938..5289760RNA-dependent RNA polymerase family protein, putative, expressed
LOC_Os01g10140Os.2202.3.S1_x_at11/111+5304217..5321280RNA dependent RNA polymerase family protein, expressed
LOC_Os01g10140Os.2202.2.S1_x_at11/111+5304217..5321280RNA dependent RNA polymerase family protein, expressed
LOC_Os01g10150Os.2203.3.S1_x_at11/111+5325721..5332320protein kinase family protein, putative, expressed
LOC_Os01g10160OsAffx.23181.1.S1_x_at11/111+5333506..5334132hypothetical protein
LOC_Os01g10170Os.12008.3.S1_at11/111+5336246..5336531hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016246biological_processRNA interference
GO:0016441biological_processposttranscriptional gene silencing
GO:0030422biological_processRNA interference, production of siRNA
GO:0003676molecular_functionnucleic acid binding
GO:0003968molecular_functionRNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2202.2.S1_x_at--246--2251Chr01:5319608..5319632 (25 bp)
AAATTCCTCCAGCAATCTGTCCTGA
LOC_Os01g10140
Os.2202.2.S1_x_at--242--491Chr01:5319594..5319618 (25 bp)
ATCTGTCCTGACACGACCAATGTGT
LOC_Os01g10140
Os.2202.2.S1_x_at--677--10071Chr01:5319560..5319584 (25 bp)
TAGTGAGCCCTCAGATGCTAGCGCT
LOC_Os01g10140
Os.2202.2.S1_x_at--298--6531Chr01:5319508..5319529 (22 bp)
GATTTTTGCTTATCTTTCCTGGAAT
LOC_Os01g10140
Os.2202.2.S1_x_at--7--6091Chr01:5319329..5319353 (25 bp)
GAGTAAAGCCTCCATTATCTACACC
LOC_Os01g10140
Os.2202.2.S1_x_at--454--2811Chr01:5319294..5319318 (25 bp)
AAGATAGAAGATGTCCTCTCCGTGG
LOC_Os01g10140
Os.2202.2.S1_x_at--752--5331Chr01:5319253..5319277 (25 bp)
GAAGTCAATGTCCATGGCTCAATTT
LOC_Os01g10140
Os.2202.2.S1_x_at--973--9451Chr01:5319218..5319242 (25 bp)
TCTGGAGCACATTTGGTCACGATAA
LOC_Os01g10140
Os.2202.2.S1_x_at--864--2731Chr01:5318508..5318531 (24 bp)
AAGAACCTTGATTCTGGTCCAGGTA
LOC_Os01g10140
Os.2202.2.S1_x_at--617--5731Chr01:5317986..5318010 (25 bp)
GACTGATTTGTCTACCTATTTGGAA
LOC_Os01g10140
Os.2202.2.S1_x_at--371--4131Chr01:5317453..5317943 (25 bp)
CGCTGCTATCGATTTTTCCTTTACA
LOC_Os01g10140
Target Sequence 
AAATTCCTCCAGCAATCTGTCCTGACACGACCAATGTGTTGAGGGAGGTAGTGAGCCCTCAGATGCTAGCGCTGGGAGAG
TTGGAGTTCAGGAAGATATTTATGATTTTTGCTTATCTTTCCTGGAATAAGAAAGGAGTAAAGCCTCCATTATCTACACC
AAAAAGTAGTAAGATAGAAGATGTCCTCTCCGTGGACAGTATCAGATCCTTGAAGTCAATGTCCATGGCTCAATTTGAGT
CACGAATCTGGAGCACATTTGGTCACGATAATATATCATCTTCAGATAGAGCAAAGAACCTTGATTCTGGTCCAGGTATG
TCAAAAGTCTACCATTGTAATGTTGAGATAAGAGGGGGTACAGTTGTCAAAATTTTCAAGGGACCATATATTGAGAATAG
GAGGACTCATCTTCAGAAAGTTCTTGGTGATGATAACGTCCTTGTAGTAAAATTTATGGAGATATCTTCAGACACTGAGA
CTGATTTGTCTACCTATTTGGAACACTACCATAAGGTTGCTGAAGAGGGTATTGTTTTGGGTTTGCGCTGCTATCGATTT
TTCCTTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2202.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis