Browse Element(s) Details


Os.2202.3.S1_x_at

Description gb:AU100840
DB_XREF= gi:9865090
DB_XREF=AU100840
CLONE=C52409
TID=Os.2202.3
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.2202 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0419B01.14 (P0419B01.14), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1014011/11RNA dependent RNA polymerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10130Os.32212.2.S1_x_at11/111+5284938..5289760RNA-dependent RNA polymerase family protein, putative, expressed
LOC_Os01g10130Os.32212.1.A1_at11/111+5284938..5289760RNA-dependent RNA polymerase family protein, putative, expressed
LOC_Os01g10130Os.5217.1.S1_at1/111+5284938..5289760RNA-dependent RNA polymerase family protein, putative, expressed
LOC_Os01g10140Os.2202.3.S1_x_at11/111+5304217..5321280RNA dependent RNA polymerase family protein, expressed
LOC_Os01g10140Os.2202.2.S1_x_at11/111+5304217..5321280RNA dependent RNA polymerase family protein, expressed
LOC_Os01g10150Os.2203.3.S1_x_at11/111+5325721..5332320protein kinase family protein, putative, expressed
LOC_Os01g10160OsAffx.23181.1.S1_x_at11/111+5333506..5334132hypothetical protein
LOC_Os01g10170Os.12008.3.S1_at11/111+5336246..5336531hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016246biological_processRNA interference
GO:0016441biological_processposttranscriptional gene silencing
GO:0030422biological_processRNA interference, production of siRNA
GO:0003676molecular_functionnucleic acid binding
GO:0003968molecular_functionRNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2202.3.S1_x_at--29--5771Chr01:5304738..5304762 (25 bp)
GACGTGTTCTCCGAGGCCTGTGCAA
LOC_Os01g10140
Os.2202.3.S1_x_at--430--1391Chr01:5304695..5304719 (25 bp)
AGAAAGCACGGTCTGCCAACAACGT
LOC_Os01g10140
Os.2202.3.S1_x_at--924--4851Chr01:5304654..5304678 (25 bp)
GCTTGGAAAGTTGCCGGCCGTGCAT
LOC_Os01g10140
Os.2202.3.S1_x_at--1015--31Chr01:5304631..5304655 (25 bp)
ATTGTGCCATTTCTACACGGTCAAG
LOC_Os01g10140
Os.2202.3.S1_x_at--275--1071Chr01:5304602..5304626 (25 bp)
AGGGTAACGCTGTGGTTTGCTCGCT
LOC_Os01g10140
Os.2202.3.S1_x_at--53--2531Chr01:5304575..5304599 (25 bp)
AACTTCTCCGCAACTTCAGATTTAC
LOC_Os01g10140
Os.2202.3.S1_x_at--76--4231Chr01:5304541..5304565 (25 bp)
CCGCAAGTGAAGTAGCATCGCATTT
LOC_Os01g10140
Os.2202.3.S1_x_at--1138--8071Chr01:5304455..5304479 (25 bp)
GGAGCGGACTAATAAGGACTTCTTA
LOC_Os01g10140
Os.2202.3.S1_x_at--860--2531Chr01:5304390..5304414 (25 bp)
AACTAAGCTGATGGGCCTATTAACA
LOC_Os01g10140
Os.2202.3.S1_x_at--634--9811Chr01:5304370..5304394 (25 bp)
TAACATGGCTGCTTGAAGTGAACAC
LOC_Os01g10140
Os.2202.3.S1_x_at--641--4851Chr01:5304325..5304349 (25 bp)
GCTACGTTAGCTCTGGAATCATTTC
LOC_Os01g10140
Target Sequence 
GACGTGTTCTCCGAGGCCTGTGCAATCTACCNGATCGCGTATGAGAAAGCACGGTCTGCCAACAACGTCGCCAGATGTGG
NTTCGCTTGGAAAGTTGCCGGCCGTGCATTGTGCCATTTCTACACGGTCAAGAATGAGGGTAACGCTGTGGTTTGCTCGC
TCCAACTTCTCCGCAACTTCAGATTTACCAAGAAGTACCGCAAGTGAAGTAGCATCGCATTTAGGGATAGTTAATTTGTA
TGAAGTTTGGCGTATGTAGTATTGTAACAGCAATATAGGAGCAGGAGCGGACTAATAAGGACTTCTTAAGCTGATGGTTT
AGTAGGAAAATGTCAGGACAGACTTTATAACTAAGCTGATGGGCCTATTAACATGGCTGCTTGAAGTGAACACAAGCAGT
CAAGCTAAAGATTGCTACGTTAGCTCTGGAATCATTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2202.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis