Browse Element(s) Details


OsAffx.10993.1.S1_at

Description gb:NM_188270.1
DB_XREF= gi:34903623
GEN=B1046G12.19
TID=OsAffx.10993.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) transport protein-like (B1046G12.19), mRNA.
PROD=transport protein-like
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1024011/11organic cation transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10200OsAffx.23183.1.S1_at11/111+5366204..5366693hypothetical protein
LOC_Os01g10210Os.20203.1.S1_s_at11/111+5370432..5371594expressed protein
LOC_Os01g10210Os.20203.1.S1_at11/111+5370432..5371594expressed protein
LOC_Os01g10219NANA1+5373117..5373358NA
LOC_Os01g10230NANA1+5381041..5381619hypothetical protein
LOC_Os01g10240OsAffx.10993.1.S1_at11/111+5383797..5384930organic cation transporter, putative, expressed
LOC_Os01g10240OsAffx.10993.1.S1_x_at11/111+5383797..5384930organic cation transporter, putative, expressed
LOC_Os01g10240OsAffx.10993.2.S1_x_at1/111+5383797..5384930organic cation transporter, putative, expressed
LOC_Os01g10250Os.9487.1.S1_a_at11/111+5386541..5391214hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g10260OsAffx.22146.1.S1_x_at11/111+5398203..5398817expressed protein
LOC_Os01g10270Os.29966.1.S1_at2/111+5400104..5401369hypothetical protein
LOC_Os01g10280Os.14917.2.S1_x_at11/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.1.S1_x_at11/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.2.S1_at10/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.1.S1_at10/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10993.1.S1_at--362--2991Chr01:5384369..5384393 (25 bp)
AATGTCGAGCTTCACCATGCTGGAT
LOC_Os01g10240
OsAffx.10993.1.S1_at--746--7211Chr01:5384372..5384396 (25 bp)
GTCGAGCTTCACCATGCTGGATATG
LOC_Os01g10240
OsAffx.10993.1.S1_at--831--5911Chr01:5384375..5384399 (25 bp)
GAGCTTCACCATGCTGGATATGTGC
LOC_Os01g10240
OsAffx.10993.1.S1_at--93--10531Chr01:5384379..5384403 (25 bp)
TTCACCATGCTGGATATGTGCGCCG
LOC_Os01g10240
OsAffx.10993.1.S1_at--382--4331Chr01:5384383..5384407 (25 bp)
CCATGCTGGATATGTGCGCCGTGGA
LOC_Os01g10240
OsAffx.10993.1.S1_at--982--731Chr01:5384439..5384463 (25 bp)
ATGTTAGCCATGCTGCGGTCGATAT
LOC_Os01g10240
OsAffx.10993.1.S1_at--395--8791Chr01:5384440..5384464 (25 bp)
TGTTAGCCATGCTGCGGTCGATATG
LOC_Os01g10240
OsAffx.10993.1.S1_at--825--7491Chr01:5384471..5384495 (25 bp)
GTGGTGGGCACTCCAGAGGCTGGCG
LOC_Os01g10240
OsAffx.10993.1.S1_at--339--9871Chr01:5384577..5384601 (25 bp)
TACAGCGTAGCGTACAACGCAGCGG
LOC_Os01g10240
OsAffx.10993.1.S1_at--762--1711Chr01:5384793..5384817 (25 bp)
ACCACGCGCTCGTCTAGGACAACGG
LOC_Os01g10240
OsAffx.10993.1.S1_at--28--4571Chr01:5384798..5384822 (25 bp)
GCGCTCGTCTAGGACAACGGCAAGC
LOC_Os01g10240
Target Sequence 
AATGTCGAGCTTCACCATGCTGGATATGTGCGCCGTGGAGGTGGGGGACGGAGTGGCCGGTGGCGAGGGCATGTTAGCCA
TGCTGCGGTCGATATGTGAGTGGTGGTGGGCACTCCAGAGGCTGGCGACGATCACGACGGCCAGCTTCAGCATCGGCGTG
GTCTACTACGGGATGCCGCTCAGCGTGGGCAGCCTGAGCTTCGACCTCTACAGCGTAGCGTACAACGCAGCGGCCGAGCT
CCCGTCGTCTTTCCTCTCGTGGCTCCTCATGGGCAGGTTCAACCAGCGCAGCTCGGTGGTCGAGCTCACCGCGGTGTCCG
GGCTGTGCAGCCTCGCGTGCGTCGTCATCCCGGCGGACCCGGAGGCCGGCACCGGTGGCTTGCGCCTCGCCGCCGAGCTG
TCCTCCTTCTTCGCGTCGTGCGCGACCACGCGCTCGTCTAGGACAACGGCAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis