Browse Element(s) Details


OsAffx.10993.2.S1_x_at

Description gb:NM_190486.1
DB_XREF= gi:34908055
GEN=P0506B12.17
TID=OsAffx.10993.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0506B12.17 (P0506B12.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g375301/11Major Facilitator Superfamily protein, expressed
LOC_Os01g102401/11organic cation transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37490NANA7+22447647..22447913hypothetical protein
LOC_Os07g37500NANA7+22452438..22452806hypothetical protein
LOC_Os07g37510Os.46485.1.S1_at1/117+22455222..22456835Major Facilitator Superfamily protein
LOC_Os07g37520Os.40360.1.S1_x_at1/117+22463955..22465440hypothetical protein
LOC_Os07g37530Os.46485.1.S1_at9/117+22472867..22475482Major Facilitator Superfamily protein, expressed
LOC_Os07g37530OsAffx.10993.2.S1_x_at1/117+22472867..22475482Major Facilitator Superfamily protein, expressed
LOC_Os07g37530OsAffx.10993.1.S1_x_at1/117+22472867..22475482Major Facilitator Superfamily protein, expressed
LOC_Os07g37540OsAffx.5562.1.S1_at11/117+22484437..22484763hypothetical protein
LOC_Os07g37550Os.28216.2.S1_s_at11/117+22485740..22487030Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor, putative, expressed
LOC_Os07g37550Os.28216.2.S1_a_at8/117+22485740..22487030Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor, putative, expressed
LOC_Os07g37550Os.28216.3.S1_x_at3/117+22485740..22487030Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor, putative, expressed
LOC_Os07g37560Os.10019.1.S1_a_at11/117+22487133..22496733Myosin head family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10993.2.S1_x_at--515--9611Chr01:36170261..36170285 (25 bp)
TCATCTGCATGCTCGGCTTGGCGAT
NONE
OsAffx.10993.2.S1_x_at--1156--6711Chr01:36170105..36170129 (25 bp)
GTTCTTCGCTGACAACCTCGTCGGA
NONE
OsAffx.10993.2.S1_x_at--18--9331Chr01:36170100..36170124 (25 bp)
TCGCTGACAACCTCGTCGGAGGCTT
NONE
OsAffx.10993.2.S1_x_at--44--9451Chr01:36170085..36170109 (25 bp)
TCGGAGGCTTTCTACTCACGACGCT
NONE
OsAffx.10993.2.S1_x_at--463--9332Chr01:5383918..5383942 (25 bp)
TCGCCGACACTCATCTGGGACGAAG
LOC_Os01g10240
OsAffx.10993.2.S1_x_at--1026--5292Chr07:22473386..22473410 (25 bp)
GAAGGAAGATGCTCGTCCTGTCACT
LOC_Os07g37530
OsAffx.10993.2.S1_x_at--911--8731Chr01:36170022..36170046 (25 bp)
TGTCACTGGCGACCATGCCCGTGTC
NONE
OsAffx.10993.2.S1_x_at--21--9351Chr01:36169914..36169938 (25 bp)
TCGCGTGTGTCGTCATCCCGGCGGA
NONE
OsAffx.10993.2.S1_x_at--213--1571Chr01:36169851..36169875 (25 bp)
AGCTATCCTCCTTCGCGTCATGTGA
NONE
OsAffx.10993.2.S1_x_at--1147--9611Chr01:36169834..36169858 (25 bp)
TCATGTGAGACCACGCGCTCATCTG
NONE
OsAffx.10993.2.S1_x_at--574--5171Chr01:36169807..36169831 (25 bp)
GCAAGGGTGGTGACCACGCCGACAA
NONE
Target Sequence 
TCATCTGCATGCTCGGCTTGGCGATGAGTGGCGCCGTCGCGCTCGCGCTCAAGAGTGGCGGCTGCCCGGCGCTCGTCTCC
CTCCCGGCGTCGTCGTTCTTCGCTGACAACCTCGTCGGAGGCTTTCTACTCACGACGCTCGCCGACACTCATCTGGGACG
AAGGAAGATGCTCGTCCTGTCACTGGCGACCATGCCCGTGTCCGTCCTCTCGTGGCTCCTCATGGGCAGGTTCAACCGGC
GCAGCTCGGTGGTCGAGCTCACCGCGGCGTCCGGGCTATGCAGCCTCGCGTGTGTCGTCATCCCGGCGGACCCGGAGGCC
AGCACCGGTGGCTTGCGCCTCGCCGCCGAGCTATCCTCCTTCGCGTCATGTGAGACCACGCGCTCATCTGGGGCAAGGGT
GGTGACCACGCCGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10993.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis