Browse Element(s) Details


Os.46485.1.S1_at

Description gb:AK072020.1
DB_XREF= gi:32982043
TID=Os.46485.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46485 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013104C21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013104C21, full insert sequence.
FL= gb:AK072020.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g375309/11Major Facilitator Superfamily protein, expressed
LOC_Os01g227101/11major facilitator superfamily protein, expressed
LOC_Os07g375101/11Major Facilitator Superfamily protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37490NANA7+22447647..22447913hypothetical protein
LOC_Os07g37500NANA7+22452438..22452806hypothetical protein
LOC_Os07g37510Os.46485.1.S1_at1/117+22455222..22456835Major Facilitator Superfamily protein
LOC_Os07g37520Os.40360.1.S1_x_at1/117+22463955..22465440hypothetical protein
LOC_Os07g37530Os.46485.1.S1_at9/117+22472867..22475482Major Facilitator Superfamily protein, expressed
LOC_Os07g37530OsAffx.10993.2.S1_x_at1/117+22472867..22475482Major Facilitator Superfamily protein, expressed
LOC_Os07g37530OsAffx.10993.1.S1_x_at1/117+22472867..22475482Major Facilitator Superfamily protein, expressed
LOC_Os07g37540OsAffx.5562.1.S1_at11/117+22484437..22484763hypothetical protein
LOC_Os07g37550Os.28216.2.S1_s_at11/117+22485740..22487030Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor, putative, expressed
LOC_Os07g37550Os.28216.2.S1_a_at8/117+22485740..22487030Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor, putative, expressed
LOC_Os07g37550Os.28216.3.S1_x_at3/117+22485740..22487030Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor, putative, expressed
LOC_Os07g37560Os.10019.1.S1_a_at11/117+22487133..22496733Myosin head family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46485.1.S1_at--48--9111Chr07:22474256..22474280 (25 bp)
TGCTGCTCATGTACTCGATCGAGCT
LOC_Os07g37530
Os.46485.1.S1_at--953--3831Chr07:22474258..22474282 (25 bp)
CTGCTCATGTACTCGATCGAGCTGT
LOC_Os07g37530
Os.46485.1.S1_at--486--1332Chr07:22474379..22474403 (25 bp)
AGAGGAGCTACTGGTCGTTCGGCGT
LOC_Os07g37530
Os.46485.1.S1_at--815--4151NONE
CGCCGCCGTCTTGTATGGAGGATAA
NONE
Os.46485.1.S1_at--209--4251NONE
CCGTCTTGTATGGAGGATAAGGCTA
NONE
Os.46485.1.S1_at--344--4871Chr07:22474529..22474553 (25 bp)
GCTATGGCGCGAGCGACATGGATAA
LOC_Os07g37530
Os.46485.1.S1_at--285--8472Chr07:22474533..22474557 (25 bp)
TGGCGCGAGCGACATGGATAACAAC
LOC_Os07g37530
Os.46485.1.S1_at--1159--7631Chr07:22474559..22474583 (25 bp)
GGGAGCTCGTGTAGATGACTTTCAG
LOC_Os07g37530
Os.46485.1.S1_at--276--7431Chr07:22474567..22474591 (25 bp)
GTGTAGATGACTTTCAGGTTTGTTC
LOC_Os07g37530
Os.46485.1.S1_at--1017--3472Chr07:22474581..22474605 (25 bp)
CAGGTTTGTTCTGTACATCTTGGAA
LOC_Os07g37530
Os.46485.1.S1_at--379--6851Chr07:22474584..22474608 (25 bp)
GTTTGTTCTGTACATCTTGGAAATT
LOC_Os07g37530
Target Sequence 
TGCTGCTCATGTACTCGATCGAGCTGTTCCCGACGTCGGTGCGCAACTCGGCGGTGGGGCTGGTGCGGCAGGCGGGGGTG
CTGGGCGGCGTGGTGGCGCCCATGCTCGTCGCGCTCGGCCGCGAGAGGAGCTACTGGTCGTTCGGCGTGTTCGGGCTCAC
CGTCGGCTGCCTCGGGCTGTTCGTCACCTTCCTGCCGGAGACGAAGGGGAGGAGGTTGTCGGACACCATGGAGGATGAGG
AGGAGGCCGCCGCCGTCTTGTATGGAGGATAAGGCTATGGCGCGAGCGACATGGATAACAACGGGGAGCTCGTGTAGATG
ACTTTCAGGTTTGTTCTGTACATCTTGGAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46485.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis