Browse Element(s) Details


Os.35261.1.S1_at

Description gb:AK068290.1
DB_XREF= gi:32978308
TID=Os.35261.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35261 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1015E06.6 (B1015E06.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151I06, full insert sequence.
FL= gb:AK068290.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1035011/11MPPN domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10300OsAffx.23184.1.S1_at11/111+5413986..5415547expressed protein
LOC_Os01g10310OsAffx.1977.1.S1_x_at10/111+5420861..5421373hypothetical protein
LOC_Os01g10320Os.26565.3.S1_at11/111+5423343..5427416class III HD-Zip protein 6, putative, expressed
LOC_Os01g10340Os.6428.1.S1_at10/111+5432245..5439448expressed protein
LOC_Os01g10340OsAffx.12165.1.S1_at1/111+5432245..5439448expressed protein
LOC_Os01g10350Os.35261.1.S1_at11/111+5439668..5443048MPPN domain containing protein, expressed
LOC_Os01g10370Os.50646.1.S1_s_at11/111+5451574..5452493AP2 domain containing protein, expressed
LOC_Os01g10370Os.55837.1.S1_at11/111+5451574..5452493AP2 domain containing protein, expressed
LOC_Os01g10370Os.55837.1.S1_x_at11/111+5451574..5452493AP2 domain containing protein, expressed
LOC_Os01g10380NANA1+5460912..5464244transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g10390NANA1+5466921..5469815transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35261.1.S1_at--195--1211Chr01:5442627..5442651 (25 bp)
AGTTATGGACCTGATGTTCGGCCTC
LOC_Os01g10350
Os.35261.1.S1_at--441--6271Chr01:5442639..5442663 (25 bp)
GATGTTCGGCCTCTAAATCCTGTTA
LOC_Os01g10350
Os.35261.1.S1_at--353--8431Chr01:5442646..5442670 (25 bp)
GGCCTCTAAATCCTGTTACCAAGTA
LOC_Os01g10350
Os.35261.1.S1_at--664--3871Chr01:5442658..5442682 (25 bp)
CTGTTACCAAGTACTGGCTGTTATT
LOC_Os01g10350
Os.35261.1.S1_at--34--7011Chr01:5442668..5442692 (25 bp)
GTACTGGCTGTTATTCTTTTGGCTG
LOC_Os01g10350
Os.35261.1.S1_at--590--11Chr01:5442680..5442704 (25 bp)
ATTCTTTTGGCTGTTCCAAGGCAAA
LOC_Os01g10350
Os.35261.1.S1_at--183--4711Chr01:5442689..5442713 (25 bp)
GCTGTTCCAAGGCAAATCGAGGATT
LOC_Os01g10350
Os.35261.1.S1_at--234--511Chr01:5442704..5442728 (25 bp)
ATCGAGGATTACTGATCATAACATT
LOC_Os01g10350
Os.35261.1.S1_at--834--9591Chr01:5442719..5442743 (25 bp)
TCATAACATTTCTTATTGTTGGGTT
LOC_Os01g10350
Os.35261.1.S1_at--726--10251Chr01:5443011..5443035 (25 bp)
TTTGACATGAGAGCCTATATATATG
LOC_Os01g10350
Os.35261.1.S1_at--785--4451Chr01:5443023..5443047 (25 bp)
GCCTATATATATGTTGAATGCGTCT
LOC_Os01g10350
Target Sequence 
AGTTATGGACCTGATGTTCGGCCTCTAAATCCTGTTACCAAGTACTGGCTGTTATTCTTTTGGCTGTTCCAAGGCAAATC
GAGGATTACTGATCATAACATTTCTTATTGTTGGGTTTTTCGCACCGAAGTGACATTATTGGTCCACAGAATCTGTATTG
TACCGAGCCTAAGATCATCAGGGTGTCATACTGGTATATCACCCGGTCGGTCTGGAGCTAGTGTTGATGGTGTTTCGCTC
GTAAGCATTCAGTGGATCATCCAATACCAAACCATATGGAAATTATGTCCATGGAAATATCATCAAGTATCATCCTGGTT
TTATACATATTGAAATGATTCTGACCTGTATGTGAATGCATCTTAGTAAATTGTTTTCGAATGATTTGACATGAGAGCCT
ATATATATGTTGAATGCGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis