Browse Element(s) Details


Os.50646.1.S1_s_at

Description gb:AY339374.1
DB_XREF= gi:33440015
TID=Os.50646.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50646 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Ap21 mRNA, complete cds.
PROD=Ap21
FL= gb:AY339374.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1037011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10320Os.26565.3.S1_at11/111+5423343..5427416class III HD-Zip protein 6, putative, expressed
LOC_Os01g10340Os.6428.1.S1_at10/111+5432245..5439448expressed protein
LOC_Os01g10340OsAffx.12165.1.S1_at1/111+5432245..5439448expressed protein
LOC_Os01g10350Os.35261.1.S1_at11/111+5439668..5443048MPPN domain containing protein, expressed
LOC_Os01g10370Os.50646.1.S1_s_at11/111+5451574..5452493AP2 domain containing protein, expressed
LOC_Os01g10370Os.55837.1.S1_at11/111+5451574..5452493AP2 domain containing protein, expressed
LOC_Os01g10370Os.55837.1.S1_x_at11/111+5451574..5452493AP2 domain containing protein, expressed
LOC_Os01g10380NANA1+5460912..5464244transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g10390NANA1+5466921..5469815transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g10400Os.7992.1.S1_a_at10/111+5475291..5476628expressed protein
LOC_Os01g10400Os.7992.3.S1_x_at7/111+5475291..5476628expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007275biological_processdevelopment
GO:0009825biological_processmultidimensional cell growth
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50646.1.S1_s_at--570--4511Chr01:5452180..5452204 (25 bp)
GCACCTTCCCGTGCCCGGAGATGGC
LOC_Os01g10370
Os.50646.1.S1_s_at--212--6071Chr01:5451794..5451818 (25 bp)
GAGTTCGGGACGTCGGATCATTGCT
LOC_Os01g10370
Os.50646.1.S1_s_at--384--9431Chr01:5451790..5451814 (25 bp)
TCGGGACGTCGGATCATTGCTGGAC
LOC_Os01g10370
Os.50646.1.S1_s_at--959--4011Chr01:5451784..5451808 (25 bp)
CGTCGGATCATTGCTGGACGGCGTA
LOC_Os01g10370
Os.50646.1.S1_s_at--51--8531Chr01:5451770..5451794 (25 bp)
TGGACGGCGTACGATGCGCTTGACC
LOC_Os01g10370
Os.50646.1.S1_s_at--74--1891Chr01:5451760..5451784 (25 bp)
ACGATGCGCTTGACCCCATCGGCTT
LOC_Os01g10370
Os.50646.1.S1_s_at--702--3371Chr01:5451734..5451758 (25 bp)
CAGCCTCTCCTCTGGGAGTACTAGG
LOC_Os01g10370
Os.50646.1.S1_s_at--994--3771Chr01:5451725..5451749 (25 bp)
CTCTGGGAGTACTAGGCTGCTGCTT
LOC_Os01g10370
Os.50646.1.S1_s_at--235--8031Chr01:5451720..5451744 (25 bp)
GGAGTACTAGGCTGCTGCTTGTAAA
LOC_Os01g10370
Os.50646.1.S1_s_at--827--7011Chr01:5451717..5451741 (25 bp)
GTACTAGGCTGCTGCTTGTAAAACA
LOC_Os01g10370
Os.50646.1.S1_s_at--772--9112Chr06:26217963..26218126 (25 bp)
TGCTGCTTGTAAAACAGCTTCCTCT
NONE
Target Sequence 
GCACCTTCCCGTGCCCGGAGATGGCGGCGCGTGCGCACGACGTCGCCGCGCTCAGCATCAAGGGCGCCCGCGCCGTCCTC
AACTTCCCCGACCTCGCCCCTGCCCTCCCGCGCCCGGCCTCCCTCGCCCCCCGCGACGTCCAGGCCGCCGCCGCCCTCGC
CGCCGTCATGCACCACCACAAACACCCCTCCTCCTCCACCTCCACCTCCTCGCCGCCGGCTGCTCCTCCGCCGGACGAAC
ACCACCCTCGCCACGAGCCGCAGCAGCCTGAGTCGAGCAGGGAGGATGACCAGCAGCAGCAGCCGGCGGCGGCGGCGGCG
GCGCAGATGGCGGTGGCCGAGCTGGTGTTCGACGAGCTGGCGCCGCTGTGGGTGGAGGACGTGGTGGAGTTCGGGACGTC
GGATCATTGCTGGACGGCGTACGATGCGCTTGACCCCATCGGCTTCCAGCCTCTCCTCTGGGAGTACTAGGCTGCTGCTT
GTAAAACAGCTTCCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50646.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis