Browse Element(s) Details


Os.7992.3.S1_x_at

Description gb:CF280529
DB_XREF= gi:33657915
DB_XREF=14ETL--07-D21.g1
CLONE=14ETL--07-D21
TID=Os.7992.3
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7992 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1015E06.13 (B1015E06.13), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g104007/11expressed protein
LOC_Os08g151494/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g113201/11Metallothionein-like protein type 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10370Os.50646.1.S1_s_at11/111+5451574..5452493AP2 domain containing protein, expressed
LOC_Os01g10370Os.55837.1.S1_at11/111+5451574..5452493AP2 domain containing protein, expressed
LOC_Os01g10370Os.55837.1.S1_x_at11/111+5451574..5452493AP2 domain containing protein, expressed
LOC_Os01g10380NANA1+5460912..5464244transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g10390NANA1+5466921..5469815transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g10400Os.7992.1.S1_a_at10/111+5475291..5476628expressed protein
LOC_Os01g10400Os.7992.3.S1_x_at7/111+5475291..5476628expressed protein
LOC_Os01g10410Os.55650.1.A1_at6/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10410OsAffx.22143.1.S1_at6/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10410OsAffx.21756.5.A1_x_at1/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10410Os.7307.3.S1_x_at1/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10420OsAffx.22143.2.S1_at11/111+5487425..5488162hypothetical protein
LOC_Os01g10430Os.27867.1.S1_at11/111+5490191..5496183Cell division-related protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006878biological_processcopper ion homeostasis
GO:0009813biological_processflavonoid biosynthesis
GO:0019748biological_processsecondary metabolism
GO:0005507molecular_functioncopper ion binding
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0045431molecular_functionflavonol synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7992.3.S1_x_at--782--4753Chr05:6373319..6373339 (21 bp)
GCTGACAAGAGCCAGTGCGTGAAGA
LOC_Os05g11320
Os.7992.3.S1_x_at--759--1691Chr08:9167868..9167985 (25 bp)
AGCCAGTGCGTGAAGAAAGGTACCA
LOC_Os08g15149
Os.7992.3.S1_x_at--765--1132Chr01:5475466..5475629 (25 bp)
AGTGCGTGAAGAAAGGTACCAGCTA
LOC_Os01g10400
Os.7992.3.S1_x_at--759--8992Chr01:5475612..5475635 (24 bp)
TGAAGAAAGGTACCAGCTATGGCGT
LOC_Os01g10400
Os.7992.3.S1_x_at--717--2571Chr01:5476192..5476216 (25 bp)
AACGGCGGCTGCAAGTGCGGCACCA
LOC_Os01g10400
Os.7992.3.S1_x_at--924--7471Chr01:5476338..5476362 (25 bp)
GTGTGTGTGCTGATTATTGCTGAAT
LOC_Os01g10400
Os.7992.3.S1_x_at--316--71NONE
ATTGCTGAATTAAACACGAGATTAT
NONE
Os.7992.3.S1_x_at--968--4751NONE
GCTGAATTAAACACGAGATTATCGA
NONE
Os.7992.3.S1_x_at--645--2391NONE
AAACACGAGATTATCGATTAATTAA
NONE
Os.7992.3.S1_x_at--559--3391Chr01:5476391..5476415 (25 bp)
CAGCTGGTCGCTTCGGCGACTATGC
LOC_Os01g10400
Os.7992.3.S1_x_at--710--8871Chr01:5476439..5476463 (25 bp)
TGATGTGATGTACCCGTGCTATTCT
LOC_Os01g10400
Target Sequence 
GCTGACAAGAGCCAGTGCGTGAAGAAAGGTACCAGCTATGGCGTNCGTCATAGTTGAAGCCGAGAANGAGCCACTTCNGA
GGAGGTCGNCGCCGGCGAGGAGAACGGCGGCTGCAAGTGCGGCACCAGCTGCTCCTGCACCGACTGCANAGTGCGGCAAG
TGAAGTCACGAAGCAACCNNANNCNCNCNGNCGNCGNNNNNNCNNCNNNNNTNANTNNNCNANAANAANNACCNNNNANA
NNAGTGTGGTTTGTGTGTGTGCTGATTATTGCTGAATTAAACACGAGATTATCGATTAATTAAGCAGCTGGTCGCTTCGG
CGACTATGCGTGTATCAACGTATGAATTTGTGTGATGTGATGTACCCGTGCTATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7992.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis