Browse Element(s) Details


Os.7992.1.S1_a_at

Description gb:AF001396.1
DB_XREF= gi:2072554
TID=Os.7992.1
CNT=252
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.7992 (NCBI UniGene Cluster)
DEF=Oryza sativa metallothionein-like protein mRNA, complete cds.
PROD=metallothionein-like protein
FL= gb:AF001396.1 gb:AF147786.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1040010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10370Os.50646.1.S1_s_at11/111+5451574..5452493AP2 domain containing protein, expressed
LOC_Os01g10370Os.55837.1.S1_at11/111+5451574..5452493AP2 domain containing protein, expressed
LOC_Os01g10370Os.55837.1.S1_x_at11/111+5451574..5452493AP2 domain containing protein, expressed
LOC_Os01g10380NANA1+5460912..5464244transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g10390NANA1+5466921..5469815transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g10400Os.7992.1.S1_a_at10/111+5475291..5476628expressed protein
LOC_Os01g10400Os.7992.3.S1_x_at7/111+5475291..5476628expressed protein
LOC_Os01g10410Os.55650.1.A1_at6/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10410OsAffx.22143.1.S1_at6/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10410OsAffx.21756.5.A1_x_at1/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10410Os.7307.3.S1_x_at1/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10420OsAffx.22143.2.S1_at11/111+5487425..5488162hypothetical protein
LOC_Os01g10430Os.27867.1.S1_at11/111+5490191..5496183Cell division-related protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006878biological_processcopper ion homeostasis
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7992.1.S1_a_at--434--9251Chr01:5475342..5475366 (25 bp)
TCCTCACCACCAGAGCACAAGAAAG
LOC_Os01g10400
Os.7992.1.S1_a_at--722--5551Chr01:5475362..5475386 (25 bp)
GAAAGCATAAGCAACACAAGGGATT
LOC_Os01g10400
Os.7992.1.S1_a_at--700--5131Chr01:5475372..5475396 (25 bp)
GCAACACAAGGGATTAACTCATCAC
LOC_Os01g10400
Os.7992.1.S1_a_at--21--1071Chr01:5475380..5475404 (25 bp)
AGGGATTAACTCATCACTCACTTAG
LOC_Os01g10400
Os.7992.1.S1_a_at--1127--6551Chr01:5475383..5475407 (25 bp)
GATTAACTCATCACTCACTTAGCTA
LOC_Os01g10400
Os.7992.1.S1_a_at--60--9811Chr01:5475386..5475410 (25 bp)
TAACTCATCACTCACTTAGCTAATT
LOC_Os01g10400
Os.7992.1.S1_a_at--294--9611Chr01:5475390..5475414 (25 bp)
TCATCACTCACTTAGCTAATTAAAT
LOC_Os01g10400
Os.7992.1.S1_a_at--461--2251Chr01:5475411..5475435 (25 bp)
AAATCTTCGACCATGTCGGACAAGT
LOC_Os01g10400
Os.7992.1.S1_a_at--1087--5411NONE
GAAGCCGAGAAGAGCCACTTCGAGG
NONE
Os.7992.1.S1_a_at--367--2771Chr01:5476159..5476180 (22 bp)
AAGAGCCACTTCGAGGAGGTCGCCG
LOC_Os01g10400
Os.7992.1.S1_a_at--1143--1351Chr01:5476159..5476181 (23 bp)
AGAGCCACTTCGAGGAGGTCGCCGC
LOC_Os01g10400
Target Sequence 
TCCTCACCACCAGAGCACAAGAAAGCATAAGCAACACAAGGGATTAACTCATCACTCACTTAGCTAATTAAATCTTCGAC
CATGTCGGACAAGTGCGGCAACTGCGACTGTGCTGACAAGAGCCAGTGCGTGAAGAAAGGTACCAGCTATGGCGTCGTCA
TAGTTGAAGCCGAGAAGAGCCACTTCGAGGAGGTCGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7992.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis