Browse Element(s) Details


Os.17566.1.S1_at

Description gb:AK099035.1
DB_XREF= gi:32984244
TID=Os.17566.1
CNT=21
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.17566 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013135J07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013135J07, full insert sequence.
FL= gb:AK060415.1 gb:AK072177.1 gb:AK099035.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1845010/11GTP-binding protein TypA/BipA homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18410Os.6656.1.S1_at11/112+10715007..10716765plasma membrane intrinsic polypeptide, putative, expressed
LOC_Os02g18420OsAffx.24304.1.S1_at11/112+10721538..10721804hypothetical protein
LOC_Os02g18430OsAffx.2666.1.S1_x_at11/112+10726134..10727708Protein kinase PVPK-1, putative
LOC_Os02g18430Os.46554.2.S1_x_at1/112+10726134..10727708Protein kinase PVPK-1, putative
LOC_Os02g18440OsAffx.22940.2.S1_s_at8/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.1.S1_s_at7/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.5.S1_x_at6/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.3.S1_x_at6/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.2.S1_at3/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.5.S1_at2/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440Os.35344.3.S1_x_at2/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440Os.35344.18.S1_x_at2/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.31552.2.S1_at1/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18450Os.17566.1.S1_at10/112+10739449..10747065GTP-binding protein TypA/BipA homolog, putative, expressed
LOC_Os02g18460OsAffx.24305.1.S1_at11/112+10747493..10749004expressed protein
LOC_Os02g18470OsAffx.24306.1.S1_at11/112+10752547..10754223hypothetical protein
LOC_Os02g18480Os.50836.1.S1_at11/112+10758955..10762458lipase class 3 family protein, putative, expressed
LOC_Os02g18490OsAffx.24307.1.S1_at8/112+10764507..10767400hypothetical protein
LOC_Os02g18490OsAffx.24307.2.S1_at4/112+10764507..10767400hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003746molecular_functiontranslation elongation factor activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17566.1.S1_at--522--6911Chr02:10745468..10745492 (25 bp)
GTATCCATCAGCGACCAGGTGATTT
LOC_Os02g18450
Os.17566.1.S1_at--396--2311Chr02:10745514..10745538 (25 bp)
AAAGGCTGCAACAAATGTCCGCTCC
LOC_Os02g18450
Os.17566.1.S1_at--153--3731NONE
CTACAGTGGTTCTCGATGAAGCGTT
NONE
Os.17566.1.S1_at--1000--4631Chr02:10746576..10746600 (25 bp)
GCGTTAAGCTACAGTCTGGACGACT
LOC_Os02g18450
Os.17566.1.S1_at--517--8011Chr02:10746632..10746656 (25 bp)
GGAGGTTACTCCTGCAAGCATCCGC
LOC_Os02g18450
Os.17566.1.S1_at--736--551Chr02:10746651..10746675 (25 bp)
ATCCGCATGTGCAAGAACCCGAAAG
LOC_Os02g18450
Os.17566.1.S1_at--179--8031Chr02:10746702..10746726 (25 bp)
GGAGGTTACTCAAGCATCCTGCAAT
LOC_Os02g18450
Os.17566.1.S1_at--1115--151Chr02:10746808..10746832 (25 bp)
ATTATCTGGATTCCTCATTGGACAG
LOC_Os02g18450
Os.17566.1.S1_at--199--4871Chr02:10746837..10746861 (25 bp)
GCTTTGGGTAGTATTCTAGGCTGCA
LOC_Os02g18450
Os.17566.1.S1_at--1127--5031Chr02:10746859..10746883 (25 bp)
GCAGATACATATTCTTTCACAGCGA
LOC_Os02g18450
Os.17566.1.S1_at--61--6871Chr02:10746901..10746925 (25 bp)
GTTTGTAGGCCACATAGATACCATA
LOC_Os02g18450
Target Sequence 
GTATCCATCAGCGACCAGGTGATTTAGCAATTAATGTGTGCAAGAAAAAGGCTGCAACAAATGTCCGCTCCAACAAGGAA
ACTACAGTGGTTCTCGATGAAGCGTTAAGCTACAGTCTGGACGACTGCATAGAGTTTATTCAAGAAGATGAGCTAGTGGA
GGTTACTCCTGCAAGCATCCGCATGTGCAAGAACCCGAAAGTTTCGAAGAAAAACCGATAATGCAGTGGAGGTTACTCAA
GCATCCTGCAATTTTTTGGAGCTGCTTTGCTTTGCAAGAGCAGACTCAGATATANGATTACTCAATTTTGCAATGATTAT
AAGTTGCCAAATTATTATCTGGATTCCTCATTGGACAGAGAAGCTTTGGGTAGTATTCTAGGCTGCAGATACATATTCTT
TCACAGCGATATCAGCTGTGTTACATGTTTGTAGGCCACATAGATACCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis