Browse Element(s) Details


OsAffx.24305.1.S1_at

Description tigr:9630.m01744
TID=OsAffx.24305.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1846011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18430OsAffx.2666.1.S1_x_at11/112+10726134..10727708Protein kinase PVPK-1, putative
LOC_Os02g18430Os.46554.2.S1_x_at1/112+10726134..10727708Protein kinase PVPK-1, putative
LOC_Os02g18440OsAffx.22940.2.S1_s_at8/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.1.S1_s_at7/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.5.S1_x_at6/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.3.S1_x_at6/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.2.S1_at3/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.22940.5.S1_at2/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440Os.35344.3.S1_x_at2/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440Os.35344.18.S1_x_at2/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18440OsAffx.31552.2.S1_at1/112+10728808..10735256SWIM zinc finger family protein
LOC_Os02g18450Os.17566.1.S1_at10/112+10739449..10747065GTP-binding protein TypA/BipA homolog, putative, expressed
LOC_Os02g18460OsAffx.24305.1.S1_at11/112+10747493..10749004expressed protein
LOC_Os02g18470OsAffx.24306.1.S1_at11/112+10752547..10754223hypothetical protein
LOC_Os02g18480Os.50836.1.S1_at11/112+10758955..10762458lipase class 3 family protein, putative, expressed
LOC_Os02g18490OsAffx.24307.1.S1_at8/112+10764507..10767400hypothetical protein
LOC_Os02g18490OsAffx.24307.2.S1_at4/112+10764507..10767400hypothetical protein
LOC_Os02g18500OsAffx.12101.1.S1_at10/112+10772433..10773887Chlorophyllase-2, chloroplast precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24305.1.S1_at--1103--2631Chr02:10748041..10748065 (25 bp)
AACCAAGAATTTGCTTACGGCGAGC
LOC_Os02g18460
OsAffx.24305.1.S1_at--178--8391Chr02:10748023..10748047 (25 bp)
GGCGAGCAAAGCCAGTGCTACATTG
LOC_Os02g18460
OsAffx.24305.1.S1_at--999--2191Chr02:10747952..10747976 (25 bp)
ACAAAGCCAGTGCTACATCTTGCCG
LOC_Os02g18460
OsAffx.24305.1.S1_at--812--1631Chr02:10747891..10747915 (25 bp)
AGCGAGCAAAGCCAGTGCTACATCT
LOC_Os02g18460
OsAffx.24305.1.S1_at--574--5051Chr02:10747724..10747748 (25 bp)
GCAGCAATACTTACATGGAGATCTC
LOC_Os02g18460
OsAffx.24305.1.S1_at--568--8552Chr02:10747709..10747733 (25 bp)
TGGAGATCTCACATCGTGGCAAGAA
LOC_Os02g18460
OsAffx.24305.1.S1_at--55--7531Chr02:10747694..10747718 (25 bp)
GTGGCAAGAACCCTTTGTGACGTCG
LOC_Os02g18460
OsAffx.24305.1.S1_at--872--10551Chr02:10747647..10747671 (25 bp)
TTCTTGGTCAGGAACAGCTGCTGCC
LOC_Os02g18460
OsAffx.24305.1.S1_at--114--4611Chr02:10747596..10747620 (25 bp)
GCGAGATCTCACAGCAGCAGGGCGA
LOC_Os02g18460
OsAffx.24305.1.S1_at--79--9951Chr02:10747564..10747588 (25 bp)
TACGCGTACTGCGAGGAAAGCCAGT
LOC_Os02g18460
OsAffx.24305.1.S1_at--547--5551Chr02:10747549..10747573 (25 bp)
GAAAGCCAGTGCTACATCATGCCTG
LOC_Os02g18460
Target Sequence 
AACCAAGAATTTGCTTACGGCGAGCAAAGCCAGTGCTACATTGTGCCGGAGCAGCAGCAGCTGAGCAACCAAGAATACGC
TTACAGCGAACAAAGCCAGTGCTACATCTTGCCGGAGCAGCAGCAGCTGAGCGACCAAGAATACGCTTACAGCGAGCAAA
GCCAGTGCTACATCTTGCCGGAGCAGCAGGAGCTGAGCAACCAAGAAGCAGAATATGCTTTCGTCTGCTACGACGAGCAG
CAGCAGCAGCAGCAACAGAGCAATCAAGAAGCAGAATACGCTTTCGCCTGCTACGACGAGCAGCAGCAGCAGCAGCAGCA
GCAATACTTACATGGAGATCTCACATCGTGGCAAGAACCCTTTGTGACGTCGTCGTCCTCGTCATCACAGCAGTTTCTTG
GTCAGGAACAGCTGCTGCCTGATGGCCTCCTCCTCGACGGCTTTGGCGAGATCTCACAGCAGCAGGGCGACCAAGAATAC
GCGTACTGCGAGGAAAGCCAGTGCTACATCATGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis